Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26694 | Canola | cytosol, plastid | 86.84 | 88.17 |
| CDY26693 | Canola | plastid | 82.71 | 81.48 |
| CDY68252 | Canola | nucleus | 69.55 | 62.29 |
| CDY41028 | Canola | nucleus, plastid | 57.14 | 61.29 |
| CDY26691 | Canola | cytosol, plastid | 71.05 | 60.77 |
| CDY26692 | Canola | nucleus | 67.67 | 59.41 |
| CDY01506 | Canola | nucleus | 56.77 | 50.17 |
| CDY01503 | Canola | cytosol | 42.86 | 44.02 |
| CDX78814 | Canola | nucleus | 60.15 | 39.31 |
| CDY44500 | Canola | nucleus | 61.28 | 38.81 |
| CDY08882 | Canola | nucleus | 61.65 | 37.7 |
| CDX76549 | Canola | nucleus | 61.65 | 37.27 |
| AT4G17950.1 | Thale cress | nucleus | 61.28 | 37.13 |
| Solyc04g053090.1.1 | Tomato | plastid | 21.43 | 33.73 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 24.06 | 33.68 |
| CDY35172 | Canola | nucleus | 43.98 | 33.14 |
| CDY03203 | Canola | nucleus | 44.36 | 32.96 |
| Solyc04g053100.1.1 | Tomato | plastid | 19.55 | 31.33 |
| CDY07239 | Canola | plasma membrane | 25.94 | 29.87 |
| CDX84679 | Canola | nucleus | 29.32 | 29.77 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 29.32 | 29.77 |
| Os10t0572900-02 | Rice | nucleus | 27.44 | 29.08 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 37.97 | 28.61 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 19.17 | 26.98 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 30.83 | 26.71 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 33.83 | 25.57 |
| KRH58200 | Soybean | nucleus | 34.59 | 25.41 |
| KRH28286 | Soybean | plastid | 32.33 | 25.37 |
| CDY07238 | Canola | nucleus | 29.7 | 25.0 |
| PGSC0003DMT400052826 | Potato | nucleus | 33.83 | 25.0 |
| Os04t0589900-01 | Rice | nucleus | 35.34 | 24.8 |
| OQU82226 | Sorghum | plastid | 32.33 | 24.78 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 32.33 | 24.09 |
| KRH77206 | Soybean | nucleus | 30.45 | 23.96 |
| KRH04337 | Soybean | nucleus | 31.95 | 23.88 |
| CDY47428 | Canola | nucleus | 27.07 | 23.3 |
| Zm00001d026036_P001 | Maize | nucleus | 34.96 | 23.13 |
| CDY42495 | Canola | nucleus | 28.57 | 22.49 |
| CDY37704 | Canola | nucleus | 31.58 | 22.4 |
| CDY51561 | Canola | nucleus | 28.57 | 22.35 |
| CDX71746 | Canola | nucleus | 28.57 | 22.09 |
| TraesCS2A01G449500.1 | Wheat | plastid | 33.83 | 21.95 |
| CDX98767 | Canola | nucleus | 27.07 | 21.88 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 33.83 | 21.84 |
| CDY48928 | Canola | nucleus | 28.2 | 21.8 |
| CDX89109 | Canola | nucleus | 27.44 | 21.79 |
| CDY37070 | Canola | nucleus | 27.82 | 21.7 |
| CDY58791 | Canola | nucleus | 26.69 | 21.65 |
| CDY04392 | Canola | nucleus | 21.8 | 21.64 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 33.46 | 21.6 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 26.69 | 21.58 |
| CDY27354 | Canola | nucleus | 28.2 | 21.49 |
| CDY52506 | Canola | nucleus | 28.2 | 21.49 |
| Solyc08g006950.2.1 | Tomato | nucleus | 31.58 | 21.48 |
| CDY41291 | Canola | nucleus | 24.44 | 21.31 |
| Zm00001d030053_P003 | Maize | plastid | 32.71 | 20.86 |
| CDY05594 | Canola | nucleus | 27.82 | 20.79 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 33.46 | 20.75 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 30.83 | 20.6 |
| CDY30005 | Canola | nucleus | 29.32 | 20.47 |
| KXG38867 | Sorghum | plastid | 32.33 | 20.33 |
| CDY21122 | Canola | nucleus | 29.32 | 20.21 |
| CDY65362 | Canola | nucleus | 27.82 | 19.89 |
| CDY52477 | Canola | nucleus | 27.44 | 19.84 |
| CDY16785 | Canola | nucleus | 28.95 | 19.64 |
| CDX87241 | Canola | nucleus | 28.57 | 19.44 |
| CDY00271 | Canola | nucleus | 29.32 | 19.35 |
| CDX94457 | Canola | nucleus | 27.44 | 19.31 |
| CDY30710 | Canola | nucleus | 28.95 | 19.2 |
| CDY25500 | Canola | nucleus | 26.69 | 19.19 |
| CDX86910 | Canola | nucleus | 28.57 | 19.05 |
| CDY34355 | Canola | nucleus | 26.69 | 18.78 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 31.58 | 18.63 |
| CDY45364 | Canola | nucleus | 25.56 | 18.53 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 31.58 | 18.5 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 31.58 | 18.5 |
| CDX89422 | Canola | nucleus | 26.69 | 18.49 |
| CDX92693 | Canola | nucleus | 27.07 | 18.18 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 31.58 | 18.1 |
| CDY13231 | Canola | nucleus | 27.82 | 18.05 |
| CDY49703 | Canola | nucleus | 27.07 | 18.05 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 24.44 | 17.96 |
| CDX82971 | Canola | plastid | 14.29 | 17.67 |
| CDY39751 | Canola | nucleus | 24.81 | 17.28 |
| CDY46385 | Canola | nucleus | 24.81 | 17.28 |
| CDY38874 | Canola | nucleus | 27.44 | 17.26 |
| CDY00488 | Canola | nucleus | 27.44 | 17.02 |
| CDY32624 | Canola | nucleus | 26.69 | 16.75 |
| CDX91598 | Canola | nucleus | 26.32 | 16.71 |
| CDY65097 | Canola | nucleus | 26.32 | 16.71 |
| CDX99902 | Canola | nucleus | 27.44 | 16.63 |
Protein Annotations
| EnsemblPlants:CDY41027 | EnsemblPlantsGene:GSBRNA2T00072323001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY41027 | ProteinID:CDY41027.1 | SEG:seg | SUPFAM:SSF117856 |
| UniParc:UPI0004EEB80D | UniProt:A0A078HT49 | MapMan:35.1 | : | : | : |
Description
BnaC05g14850DBnaC05g14850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT49]
Coordinates
chrLK032488:-:103950..105125
Molecular Weight (calculated)
27128.6 Da
IEP (calculated)
4.499
GRAVY (calculated)
-0.375
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSKETQQQQ NRNAAAPLAG PTSTSQAMHN RSDLRQPQPQ PDPLVLDGAP NSLPVQQPWM LLGVEQLARA RARAYAPPDG GDSGGGANAG PPARGRGEEG
101: SLTAHVININ AGEDIAAKLV AFMNQEPRHV CVLSALGDVS IAELQSNNSL GLVKYEGPYV ITNMSGTFSN TESNGTVTRT GNLNVSLAGP DFKIVGGCVG
201: GMLVAGSPVQ VIVGSFVPEG VKLSAASAPD NVLNSSGGGG PGLPQSQGPS ESSEENDSTS PGNNPQ
101: SLTAHVININ AGEDIAAKLV AFMNQEPRHV CVLSALGDVS IAELQSNNSL GLVKYEGPYV ITNMSGTFSN TESNGTVTRT GNLNVSLAGP DFKIVGGCVG
201: GMLVAGSPVQ VIVGSFVPEG VKLSAASAPD NVLNSSGGGG PGLPQSQGPS ESSEENDSTS PGNNPQ
001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ
Arabidopsis Description
AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.