Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028265.1-P | Field mustard | nucleus | 99.53 | 99.53 |
| CDX99902 | Canola | nucleus | 93.01 | 90.89 |
| CDY32624 | Canola | nucleus | 84.62 | 85.61 |
| CDY38874 | Canola | nucleus | 84.38 | 85.58 |
| AT5G51590.1 | Thale cress | nucleus | 79.49 | 81.38 |
| CDX91598 | Canola | nucleus | 76.46 | 78.28 |
| CDY65097 | Canola | nucleus | 76.22 | 78.04 |
| CDX92693 | Canola | nucleus | 61.07 | 66.16 |
| CDY49703 | Canola | nucleus | 60.84 | 65.41 |
| CDX94457 | Canola | nucleus | 56.64 | 64.29 |
| CDX89422 | Canola | nucleus | 56.18 | 62.76 |
| KRH34345 | Soybean | nucleus | 36.13 | 46.97 |
| KRG92455 | Soybean | nucleus | 36.13 | 46.97 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 38.0 | 46.44 |
| Solyc03g007150.2.1 | Tomato | nucleus | 33.8 | 44.62 |
| KRH09229 | Soybean | nucleus | 34.97 | 43.6 |
| PGSC0003DMT400071865 | Potato | plastid | 31.24 | 43.51 |
| KRH38723 | Soybean | nucleus | 34.73 | 43.31 |
| CDX86910 | Canola | nucleus | 40.09 | 43.11 |
| CDY00271 | Canola | nucleus | 40.33 | 42.93 |
| CDY16785 | Canola | nucleus | 39.16 | 42.86 |
| CDX87241 | Canola | nucleus | 38.93 | 42.71 |
| CDY30710 | Canola | nucleus | 39.63 | 42.39 |
| CDX84679 | Canola | nucleus | 25.87 | 42.37 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 25.87 | 42.37 |
| CDY07239 | Canola | plasma membrane | 22.38 | 41.56 |
| PGSC0003DMT400079651 | Potato | nucleus | 33.33 | 41.33 |
| CDY07238 | Canola | nucleus | 30.3 | 41.14 |
| Solyc06g035430.2.1 | Tomato | nucleus | 32.63 | 40.46 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 31.47 | 40.18 |
| CDX98767 | Canola | nucleus | 30.77 | 40.12 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 30.3 | 39.51 |
| CDY04392 | Canola | nucleus | 24.48 | 39.18 |
| CDY41291 | Canola | nucleus | 27.51 | 38.69 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 34.03 | 38.32 |
| CDY47428 | Canola | nucleus | 27.27 | 37.86 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 33.1 | 37.17 |
| CDX82971 | Canola | plastid | 18.18 | 36.28 |
| Os08t0118000-01 | Rice | nucleus | 30.54 | 35.22 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 31.93 | 35.13 |
| TraesCS7B01G215600.1 | Wheat | plastid | 30.54 | 33.25 |
| HORVU7Hr1G075040.1 | Barley | plastid | 30.3 | 33.08 |
| TraesCS7D01G312100.1 | Wheat | plastid | 30.54 | 33.0 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 30.07 | 32.99 |
| TraesCS7A01G315100.1 | Wheat | plastid | 30.54 | 32.91 |
| KXG24283 | Sorghum | plastid | 30.07 | 32.82 |
| CDY58791 | Canola | nucleus | 24.24 | 31.71 |
| CDY37070 | Canola | nucleus | 25.17 | 31.67 |
| CDY37704 | Canola | nucleus | 27.51 | 31.47 |
| CDY42495 | Canola | nucleus | 24.71 | 31.36 |
| CDX89109 | Canola | nucleus | 24.48 | 31.34 |
| CDY27354 | Canola | nucleus | 24.94 | 30.66 |
| CDY51561 | Canola | nucleus | 24.01 | 30.29 |
| CDY25500 | Canola | nucleus | 26.11 | 30.27 |
| CDX71746 | Canola | nucleus | 24.24 | 30.23 |
| CDY48928 | Canola | nucleus | 24.24 | 30.23 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 27.51 | 29.65 |
| CDY45364 | Canola | nucleus | 25.17 | 29.43 |
| CDY34355 | Canola | nucleus | 25.87 | 29.37 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 24.71 | 29.28 |
| CDY01503 | Canola | cytosol | 17.48 | 28.96 |
| CDY41028 | Canola | nucleus, plastid | 16.32 | 28.23 |
| CDY41027 | Canola | cytosol | 17.02 | 27.44 |
| CDY26692 | Canola | nucleus | 18.88 | 26.73 |
| CDY26694 | Canola | cytosol, plastid | 16.32 | 26.72 |
| CDY26693 | Canola | plastid | 16.78 | 26.67 |
| CDY01506 | Canola | nucleus | 18.65 | 26.58 |
| CDY39751 | Canola | nucleus | 23.54 | 26.44 |
| CDY46385 | Canola | nucleus | 23.54 | 26.44 |
| CDX78814 | Canola | nucleus | 24.94 | 26.29 |
| CDY30005 | Canola | nucleus | 23.08 | 25.98 |
| CDY44500 | Canola | nucleus | 25.17 | 25.71 |
| CDY21122 | Canola | nucleus | 23.08 | 25.65 |
| CDY08882 | Canola | nucleus | 25.87 | 25.52 |
| CDX76549 | Canola | nucleus | 26.11 | 25.45 |
| CDY03203 | Canola | nucleus | 21.21 | 25.42 |
| CDY68252 | Canola | nucleus | 17.48 | 25.25 |
| CDY35172 | Canola | nucleus | 20.75 | 25.21 |
| CDY26691 | Canola | cytosol, plastid | 18.18 | 25.08 |
| CDY05594 | Canola | nucleus | 20.75 | 25.0 |
| CDY52477 | Canola | nucleus | 21.45 | 25.0 |
| CDY65362 | Canola | nucleus | 21.68 | 25.0 |
| CDY52506 | Canola | nucleus | 20.28 | 24.93 |
| CDY13231 | Canola | nucleus | 20.75 | 21.71 |
Protein Annotations
| EnsemblPlants:CDY00488 | EnsemblPlantsGene:GSBRNA2T00110201001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | ncoils:Coil |
| PANTHER:PTHR31500 | PANTHER:PTHR31500:SF18 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY00488 | ProteinID:CDY00488.1 |
| SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EE940D | MapMan:35.1 | : | : |
Description
BnaA10g07850D
Coordinates
chrLK031919:-:650154..653039
Molecular Weight (calculated)
45490.8 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.598
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEREGTSNN IISSFGLNQH VAPPPPTGGG GVYHMDPPRS ENPNPFPVGL PNTTAASASA SVAAAKASEN AAPPFSLTMP VENTSSELKK KRGRPRKYNP
101: DGSLAVTLSP MPISSSVPLT TEFSSRKRGR GRGRGRGRGR GRGLVEPPIN NNNWVKNPQM FEFDNSSPVV RTPEVVTSAS FTPHVLTVNA GEDVTMKIMT
201: FSQQSSRAIC ILSANGPVSN VTLRQSMTSG GTLTYEGHFE ILSLTGSFIP SESGGTRSRA GGMSVSLAGP DGRVFGGGLA GLFIAAGPVQ VVVGRFVAGQ
301: EESQQQQQQQ QMKTQRRERF GIPTSTQASN ISFGGGSAED PKARYGLNKP VVIQAPPMSA PPVPFSQHEP QPSTNPVQGY YTNNTAEQIR DLFSSLPGED
401: DDEDDDLEGE DGDDGEFGDH SESDTEVPS
101: DGSLAVTLSP MPISSSVPLT TEFSSRKRGR GRGRGRGRGR GRGLVEPPIN NNNWVKNPQM FEFDNSSPVV RTPEVVTSAS FTPHVLTVNA GEDVTMKIMT
201: FSQQSSRAIC ILSANGPVSN VTLRQSMTSG GTLTYEGHFE ILSLTGSFIP SESGGTRSRA GGMSVSLAGP DGRVFGGGLA GLFIAAGPVQ VVVGRFVAGQ
301: EESQQQQQQQ QMKTQRRERF GIPTSTQASN ISFGGGSAED PKARYGLNKP VVIQAPPMSA PPVPFSQHEP QPSTNPVQGY YTNNTAEQIR DLFSSLPGED
401: DDEDDDLEGE DGDDGEFGDH SESDTEVPS
001: MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
Arabidopsis Description
AHL4AT-hook motif nuclear-localized protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.