Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39751 | Canola | nucleus | 97.38 | 97.38 |
| Bra025511.1-P | Field mustard | nucleus | 70.16 | 96.75 |
| CDY25500 | Canola | nucleus | 60.47 | 62.43 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 58.64 | 61.88 |
| CDY45364 | Canola | nucleus | 58.64 | 61.04 |
| CDY34355 | Canola | nucleus | 59.42 | 60.05 |
| AT1G63480.1 | Thale cress | nucleus | 55.76 | 59.0 |
| KRH05193 | Soybean | plastid | 20.16 | 52.38 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 44.5 | 49.13 |
| KRH27929 | Soybean | nucleus | 42.41 | 46.02 |
| KRH77536 | Soybean | nucleus | 42.15 | 45.1 |
| KRH41165 | Soybean | nucleus | 41.1 | 44.6 |
| Solyc08g008030.2.1 | Tomato | nucleus | 40.31 | 44.51 |
| PGSC0003DMT400014926 | Potato | plastid | 40.05 | 44.35 |
| KRH59866 | Soybean | nucleus | 40.84 | 44.32 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 38.48 | 44.14 |
| Solyc08g080960.2.1 | Tomato | nucleus | 38.22 | 43.71 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 35.86 | 39.6 |
| CDY48928 | Canola | nucleus | 35.6 | 39.53 |
| CDX71746 | Canola | nucleus | 35.34 | 39.24 |
| CDY42495 | Canola | nucleus | 34.55 | 39.05 |
| GSMUA_Achr11P... | Banana | nucleus | 37.7 | 38.81 |
| PGSC0003DMT400031843 | Potato | plastid | 38.22 | 38.02 |
| CDX89109 | Canola | nucleus | 33.25 | 37.91 |
| GSMUA_Achr11P... | Banana | nucleus | 36.91 | 37.6 |
| CDY37070 | Canola | nucleus | 33.51 | 37.54 |
| CDY27354 | Canola | nucleus | 33.77 | 36.96 |
| CDY58791 | Canola | nucleus | 31.41 | 36.59 |
| CDY51561 | Canola | nucleus | 31.94 | 35.88 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 18.32 | 35.71 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 30.1 | 35.28 |
| CDX84679 | Canola | nucleus | 23.56 | 34.35 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 23.56 | 34.35 |
| Zm00001d018515_P002 | Maize | nucleus | 32.98 | 32.47 |
| CDY04392 | Canola | nucleus | 22.51 | 32.09 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 25.65 | 31.92 |
| Os02t0824300-01 | Rice | nucleus | 32.72 | 31.73 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 32.98 | 31.5 |
| OQU85994 | Sorghum | nucleus | 32.72 | 31.17 |
| CDY07239 | Canola | plasma membrane | 18.85 | 31.17 |
| CDY47428 | Canola | nucleus | 25.13 | 31.07 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 25.65 | 29.79 |
| CDX98767 | Canola | nucleus | 25.65 | 29.79 |
| CDY07238 | Canola | nucleus | 24.61 | 29.75 |
| HORVU2Hr1G123730.3 | Barley | plastid | 16.23 | 29.52 |
| CDY01503 | Canola | cytosol | 19.9 | 29.34 |
| CDX82971 | Canola | plastid | 16.23 | 28.84 |
| CDY41291 | Canola | nucleus | 22.51 | 28.2 |
| CDY41028 | Canola | nucleus, plastid | 17.28 | 26.61 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 26.96 | 25.56 |
| CDY08882 | Canola | nucleus | 29.06 | 25.52 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 31.15 | 25.27 |
| CDX78814 | Canola | nucleus | 26.7 | 25.06 |
| Os04t0683900-01 | Rice | nucleus | 27.49 | 25.06 |
| CDX76549 | Canola | nucleus | 28.8 | 25.0 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 26.44 | 25.0 |
| CDY26693 | Canola | plastid | 17.54 | 24.81 |
| CDY41027 | Canola | cytosol | 17.28 | 24.81 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 26.18 | 24.69 |
| CDY35172 | Canola | nucleus | 22.77 | 24.65 |
| CDY37704 | Canola | nucleus | 24.08 | 24.53 |
| CDY26692 | Canola | nucleus | 19.37 | 24.42 |
| CDY52506 | Canola | nucleus | 22.25 | 24.36 |
| CDY21122 | Canola | nucleus | 24.61 | 24.35 |
| CDY44500 | Canola | nucleus | 26.7 | 24.29 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 33.51 | 24.11 |
| CDY03203 | Canola | nucleus | 22.51 | 24.02 |
| CDY16785 | Canola | nucleus | 24.61 | 23.98 |
| CDY30005 | Canola | nucleus | 23.82 | 23.88 |
| CDY38874 | Canola | nucleus | 26.44 | 23.88 |
| CDY05594 | Canola | nucleus | 22.25 | 23.88 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 24.87 | 23.87 |
| CDX94457 | Canola | nucleus | 23.56 | 23.81 |
| CDX87241 | Canola | nucleus | 24.35 | 23.79 |
| CDX92693 | Canola | nucleus | 24.61 | 23.74 |
| Zm00001d026652_P001 | Maize | plastid | 24.61 | 23.68 |
| CDY26694 | Canola | cytosol, plastid | 16.23 | 23.66 |
| CDY65097 | Canola | nucleus | 25.92 | 23.63 |
| CDY49703 | Canola | nucleus | 24.61 | 23.56 |
| CDY00488 | Canola | nucleus | 26.44 | 23.54 |
| KXG27470 | Sorghum | nucleus | 25.65 | 23.45 |
| CDY32624 | Canola | nucleus | 25.92 | 23.35 |
| CDY00271 | Canola | nucleus | 24.35 | 23.08 |
| CDX86910 | Canola | nucleus | 24.08 | 23.06 |
| CDX89422 | Canola | nucleus | 23.04 | 22.92 |
| CDX91598 | Canola | nucleus | 25.13 | 22.91 |
| CDY68252 | Canola | nucleus | 17.8 | 22.9 |
| CDY65362 | Canola | nucleus | 22.25 | 22.85 |
| CDY52477 | Canola | nucleus | 21.99 | 22.83 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 20.68 | 22.64 |
| CDX99902 | Canola | nucleus | 25.92 | 22.55 |
| CDY26691 | Canola | cytosol, plastid | 17.8 | 21.86 |
| CDY30710 | Canola | nucleus | 22.77 | 21.7 |
| CDY01506 | Canola | nucleus | 16.49 | 20.93 |
| Zm00001d001784_P002 | Maize | nucleus | 23.82 | 20.92 |
| CDY13231 | Canola | nucleus | 21.47 | 20.0 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | GO:A0A078I676 | UniProt:A0A078I676 | InterPro:AT_hook_DNA-bd_motif | EnsemblPlants:CDY46385 |
| ProteinID:CDY46385 | ProteinID:CDY46385.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00083927001 | InterPro:IPR005175 | PFAM:PF03479 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF9 | SMART:SM00384 | SUPFAM:SSF117856 |
| TMHMM:TMhelix | UniParc:UPI0004EDD16D | SEG:seg | : | : | : |
Description
BnaC04g33040DBnaC04g33040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I676]
Coordinates
chrLK032665:+:28386..30764
Molecular Weight (calculated)
40647.7 Da
IEP (calculated)
9.442
GRAVY (calculated)
-0.583
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGREAMPF PPPFYFPRGP FSSQSASAIH APPGFRPMSN PNLQLQQQQH QFPLGEQRHH QDFSHGIHMG MAAASSSSSP AMQQPPPIPT PPPHPSVAAA
101: AEEPMMVKKK RGRPRKYVPD NNEGCDLELS PMQSLQKPNI SSPISDPNAP KRARGRPPGT GRKQRLANLG EWMNTSAGFA FATHVISVEA GEDIVSKVLS
201: FSQQRPRALC IMSGTGTASA FTLRQTGSSA PTLSFQGHFD ILSVQGCYLV NEEGGSKSRT GGISVSLSRH DGFLMGGTVG TLIAASLVQV VACSFVYGSA
301: KAKVIKQENG SKEDNTTKKD NSLETPASEQ QRSPRATESA AEAAQTPLDY SSPGWAGSGG GGSRTTDSRN NNHLTDIDLT RG
101: AEEPMMVKKK RGRPRKYVPD NNEGCDLELS PMQSLQKPNI SSPISDPNAP KRARGRPPGT GRKQRLANLG EWMNTSAGFA FATHVISVEA GEDIVSKVLS
201: FSQQRPRALC IMSGTGTASA FTLRQTGSSA PTLSFQGHFD ILSVQGCYLV NEEGGSKSRT GGISVSLSRH DGFLMGGTVG TLIAASLVQV VACSFVYGSA
301: KAKVIKQENG SKEDNTTKKD NSLETPASEQ QRSPRATESA AEAAQTPLDY SSPGWAGSGG GGSRTTDSRN NNHLTDIDLT RG
001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
Arabidopsis Description
AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.