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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
  • plasma membrane 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P03370_001
GSMUA_Achr5P20630_001
GSMUA_Achr8P11400_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63480.1 GSMUA_Achr11P... AT3G61310.1 21798944
AT1G63480.1 GSMUA_Achr11P... AT3G61310.1 21798944
AT1G63480.1 GSMUA_Achr1P03070_001 AT3G61310.1 21798944
AT1G63480.1 GSMUA_Achr4P30000_001 AT3G61310.1 21798944
AT1G63480.1 GSMUA_Achr5P20630_001 AT3G61310.1 21798944
AT1G63480.1 GSMUA_Achr8P11400_001 AT3G61310.1 21798944
AT2G45850.1 GSMUA_Achr2P09840_001 AT4G17950.1 21798944
AT2G45850.1 GSMUA_Achr4P27240_001 AT4G17950.1 21798944
AT2G45850.1 GSMUA_Achr5P03370_001 AT4G17950.1 21798944
AT3G61310.1 GSMUA_Achr11P... AT2G45850.1 21798944
AT3G61310.1 GSMUA_Achr11P... AT2G45850.1 21798944
AT3G61310.1 GSMUA_Achr1P03070_001 AT2G45850.1 21798944
AT3G61310.1 GSMUA_Achr4P30000_001 AT2G45850.1 21798944
AT3G61310.1 GSMUA_Achr5P20630_001 AT2G45850.1 21798944
AT3G61310.1 GSMUA_Achr8P11400_001 AT2G45850.1 21798944
AT3G61310.1 GSMUA_Achr11P... AT3G61310.1 21798944
AT3G61310.1 GSMUA_Achr11P... AT3G61310.1 21798944
AT3G61310.1 GSMUA_Achr1P03070_001 AT3G61310.1 21798944
AT3G61310.1 GSMUA_Achr4P30000_001 AT3G61310.1 21798944
AT3G61310.1 GSMUA_Achr5P20630_001 AT3G61310.1 21798944
AT3G61310.1 GSMUA_Achr8P11400_001 AT3G61310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr5P20630_001 Banana nucleus, plasma membrane, plastid 46.93 45.95
GSMUA_Achr8P11400_001 Banana nucleus 47.55 44.8
GSMUA_Achr1P03070_001 Banana cytosol, extracellular, nucleus 26.38 43.88
VIT_15s0046g02930.t01 Wine grape nucleus, plastid 46.32 43.77
KRH00715 Soybean nucleus 45.71 43.57
KRH65066 Soybean nucleus 45.4 43.53
KRH40471 Soybean nucleus 45.09 43.11
KRH48165 Soybean nucleus 44.48 42.65
Solyc01g094460.2.1 Tomato nucleus 43.56 41.89
PGSC0003DMT400000467 Potato nucleus 43.25 41.59
GSMUA_Achr11P... Banana nucleus 47.24 41.07
VIT_02s0025g03580.t01 Wine grape nucleus 43.56 41.04
GSMUA_Achr11P... Banana nucleus 46.32 40.7
KRH05193 Soybean plastid 18.1 40.14
Bra025511.1-P Field mustard nucleus 33.13 38.99
Solyc08g080960.2.1 Tomato nucleus 39.57 38.62
GSMUA_Achr7P20540_001 Banana nucleus 34.05 37.88
Bra014444.1-P Field mustard nucleus 38.65 37.84
PGSC0003DMT400014926 Potato plastid 39.57 37.39
GSMUA_Achr5P03370_001 Banana mitochondrion, plastid 21.78 37.37
Solyc08g008030.2.1 Tomato nucleus 39.57 37.28
KRH27929 Soybean nucleus 40.18 37.22
CDX89109 Canola nucleus 38.04 37.01
CDY42495 Canola nucleus 38.34 36.98
Bra007595.1-P Field mustard nucleus 38.34 36.66
KRH59866 Soybean nucleus 39.57 36.65
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 37.73 36.61
KRH77536 Soybean nucleus 39.88 36.41
CDY37070 Canola nucleus 38.04 36.36
Bra039309.1-P Field mustard nucleus 37.73 36.07
AT2G45850.1 Thale cress nucleus 38.34 35.92
CDY48928 Canola nucleus 37.73 35.76
CDY58791 Canola nucleus 35.89 35.67
KRH41165 Soybean nucleus 38.34 35.51
CDX71746 Canola nucleus 37.42 35.47
CDY27354 Canola nucleus 37.73 35.24
HORVU2Hr1G123730.3 Barley plastid 22.7 35.24
CDY51561 Canola nucleus 36.2 34.71
PGSC0003DMT400031843 Potato plastid 40.8 34.64
CDY25500 Canola nucleus 39.26 34.59
AT3G61310.1 Thale cress nucleus, plastid 37.42 34.46
GSMUA_Achr6P13410_001 Banana cytosol, nucleus, peroxisome 38.34 34.15
Bra027642.1-P Field mustard nucleus 39.57 33.86
GSMUA_Achr2P20250_001 Banana cytosol, peroxisome, plastid 38.04 33.79
Bra003446.1-P Field mustard nucleus 34.97 33.63
GSMUA_Achr6P03420_001 Banana nucleus 37.12 33.61
GSMUA_Achr3P03710_001 Banana nucleus 37.12 33.15
GSMUA_Achr7P06500_001 Banana cytosol, plasma membrane, plastid 34.05 33.04
CDY34355 Canola nucleus 38.04 32.8
CDY64088 Canola nucleus, plasma membrane, plastid 35.89 32.32
CDY45364 Canola nucleus 36.2 32.15
GSMUA_Achr4P27240_001 Banana cytosol, extracellular, nucleus, plastid 34.66 32.1
AT1G63470.1 Thale cress nucleus 37.12 32.01
Bra027801.1-P Field mustard nucleus 36.5 31.73
AT1G63480.1 Thale cress nucleus 34.97 31.58
GSMUA_Achr1P19840_001 Banana nucleus 36.2 30.97
CDY39751 Canola nucleus 35.89 30.63
CDY46385 Canola nucleus 35.28 30.1
GSMUA_Achr9P12360_001 Banana extracellular, vacuole 37.42 29.98
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 34.97 29.84
GSMUA_Achr2P03170_001 Banana cytosol, peroxisome, plasma membrane 35.58 29.74
Zm00001d026652_P001 Maize plastid 35.89 29.47
GSMUA_Achr2P09840_001 Banana nucleus 32.21 29.41
KXG27470 Sorghum nucleus 37.42 29.19
TraesCS2A01G582300.1 Wheat nucleus 34.97 28.22
Os04t0683900-01 Rice nucleus 36.2 28.16
TraesCS2B01G604700.1 Wheat nucleus 34.36 27.79
TraesCS2D01G597900.1 Wheat cytosol, nucleus, plasma membrane, plastid 34.05 27.41
Zm00001d001784_P002 Maize nucleus 35.89 26.9
GSMUA_Achr5P23820_001 Banana cytosol, nucleus, plasma membrane 34.05 26.37
GSMUA_Achr3P03040_001 Banana nucleus, peroxisome, plasma membrane 38.04 25.62
Protein Annotations
Gene3D:3.30.1330.80MapMan:35.1InterPro:AT_hook_DNA-bd_motifGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488EnsemblPlantsGene:GSMUA_Achr4G30000_001EnsemblPlants:GSMUA_Achr4P30000_001EnsemblPlants:GSMUA_Achr4T30000_001InterPro:IPR005175UniProt:M0STB2
PFAM:PF03479InterPro:PPC_domPRINTS:PR00929PFscan:PS51742PANTHER:PTHR31500SUPFAM:SSF117856
UniParc:UPI00029573E4SEG:seg::::
Description
AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G30000_001]
Coordinates
chr4:-:27787454..27794577
Molecular Weight (calculated)
33820.8 Da
IEP (calculated)
9.433
GRAVY (calculated)
-0.303
Length
326 amino acids
Sequence
(BLAST)
001: MADPAAYFMR REIADQDAGA QLGSQVAAPP DNRLNLAGPS SGIRSSEFQV EPLSGVLSSH GGGVSRGELV KRRRGRPRKY GPDAAGAVAL AFSPTSSTGP
101: ALMSGGPDVA TPKRRRGRPP GTGRKQKLAS HGEWFSGSAG SDLIPHVITI AIGEDIATKI MSFSQQGPRA ICILSASGVV STATLCHYAT SGDAITYKGH
201: YEILCLSGSY MVSDTGGSQG RSGWLNISLF GLDGRVIGGS VAGPLLASNP VQVVVGSFVH PGSNAKNKGI ARHESGAESE HWNEDGQQRM PSSLPTQNLS
301: PSQVGGWSSS RQLDTGAHLN IDLTHG
Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)
001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG
Arabidopsis Description
AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.