Factsheet for Zm00001d026652_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001784_P002
Zm00001d009549_P002
Zm00001d010797_P001
Zm00001d012691_P001
Zm00001d012772_P001
Zm00001d012773_P003
Zm00001d015090_P001
Zm00001d018515_P002
Zm00001d026036_P001
Zm00001d026652_P001
Zm00001d030053_P003
Zm00001d036213_P002
Zm00001d038783_P001
Zm00001d038989_P002
Zm00001d043383_P001
Zm00001d043523_P001
Zm00001d043889_P001
Zm00001d047042_P004
Zm00001d051861_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	Zm00001d001784_P002	AT3G61310.1	21798944
AT1G63480.1	Zm00001d018515_P002	AT3G61310.1	21798944
AT1G63480.1	Zm00001d026652_P001	AT3G61310.1	21798944
AT1G63480.1	Zm00001d051861_P001	AT3G61310.1	21798944
AT1G63480.1	Zm00001d010797_P001	AT5G56600.1	21798944
AT1G63480.1	Zm00001d012772_P001	AT5G56600.1	21798944
AT1G63480.1	Zm00001d012773_P003	AT5G56600.1	21798944
AT1G63480.1	Zm00001d036213_P002	AT5G56600.1	21798944
AT1G63480.1	Zm00001d038783_P001	AT5G56600.1	21798944
AT1G63480.1	Zm00001d043523_P001	AT5G56600.1	21798944
AT2G45850.1	Zm00001d015090_P001	AT4G12080.1	21798944
AT2G45850.1	Zm00001d026036_P001	AT4G17950.1	21798944
AT2G45850.1	Zm00001d030053_P003	AT4G17950.1	21798944
AT2G45850.1	Zm00001d047042_P004	AT4G17950.1	21798944
AT3G61310.1	Zm00001d009549_P002	AT1G52240.1	21798944
AT3G61310.1	Zm00001d012691_P001	AT1G52240.1	21798944
AT3G61310.1	Zm00001d038989_P002	AT1G52240.1	21798944
AT3G61310.1	Zm00001d043383_P001	AT1G52240.1	21798944
AT3G61310.1	Zm00001d043889_P001	AT1G52240.1	21798944
AT3G61310.1	Zm00001d001784_P002	AT2G45850.1	21798944
AT3G61310.1	Zm00001d018515_P002	AT2G45850.1	21798944
AT3G61310.1	Zm00001d026652_P001	AT2G45850.1	21798944
AT3G61310.1	Zm00001d051861_P001	AT2G45850.1	21798944
AT3G61310.1	Zm00001d001784_P002	AT3G61310.1	21798944
AT3G61310.1	Zm00001d018515_P002	AT3G61310.1	21798944
AT3G61310.1	Zm00001d026652_P001	AT3G61310.1	21798944
AT3G61310.1	Zm00001d051861_P001	AT3G61310.1	21798944
AT3G61310.1	Zm00001d015090_P001	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27470	Sorghum	nucleus	88.16	83.73
HORVU2Hr1G123730.3	Barley	plastid	40.05	75.71
Zm00001d001784_P002	Maize	nucleus	81.61	74.48
Os04t0683900-01	Rice	nucleus	70.78	67.06
TraesCS2A01G582300.1	Wheat	nucleus	66.0	64.85
TraesCS2B01G604700.1	Wheat	nucleus	65.74	64.76
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	65.24	63.95
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	34.76	40.0
KRH40471	Soybean	nucleus	33.5	39.0
KRH00715	Soybean	nucleus	33.5	38.89
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	32.24	38.44
KRH65066	Soybean	nucleus	32.24	37.65
KRH48165	Soybean	nucleus	31.99	37.35
KRH05193	Soybean	plastid	13.6	36.73
GSMUA_Achr8P11400_001	Banana	nucleus	31.74	36.42
GSMUA_Achr4P30000_001	Banana	nucleus	29.47	35.89
VIT_02s0025g03580.t01	Wine grape	nucleus	30.73	35.26
CDY42495	Canola	nucleus	29.97	35.21
Solyc08g080960.2.1	Tomato	nucleus	29.22	34.73
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	17.13	34.69
Bra014444.1-P	Field mustard	nucleus	28.97	34.53
Solyc01g094460.2.1	Tomato	nucleus	29.47	34.51
GSMUA_Achr11P...	Banana	nucleus	32.49	34.4
CDX89109	Canola	nucleus	28.97	34.33
Bra007595.1-P	Field mustard	nucleus	29.47	34.31
CDY48928	Canola	nucleus	29.72	34.3
GSMUA_Achr11P...	Banana	nucleus	31.99	34.23
CDY58791	Canola	nucleus	28.21	34.15
CDY51561	Canola	nucleus	29.22	34.12
CDX71746	Canola	nucleus	29.47	34.01
PGSC0003DMT400000467	Potato	nucleus	28.97	33.92
KRH27929	Soybean	nucleus	29.72	33.52
CDY37070	Canola	nucleus	28.72	33.43
AT2G45850.1	Thale cress	nucleus	29.22	33.33
Bra039309.1-P	Field mustard	nucleus	28.46	33.14
Zm00001d018515_P002	Maize	nucleus	32.24	32.99
CDY27354	Canola	nucleus	28.97	32.95
KRH77536	Soybean	nucleus	29.47	32.77
Solyc08g008030.2.1	Tomato	nucleus	28.46	32.66
AT3G61310.1	Thale cress	nucleus, plastid	28.97	32.49
PGSC0003DMT400014926	Potato	plastid	28.21	32.46
Bra003446.1-P	Field mustard	nucleus	27.2	31.86
KRH41165	Soybean	nucleus	28.21	31.82
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	31.74	31.5
KRH59866	Soybean	nucleus	27.46	30.97
CDY25500	Canola	nucleus	28.72	30.81
Zm00001d052901_P002	Maize	nucleus	28.21	30.35
AT1G63470.1	Thale cress	nucleus	28.72	30.16
CDY45364	Canola	nucleus	27.71	29.97
Zm00001d020951_P002	Maize	cytosol, nucleus, peroxisome, plastid	25.19	29.85
PGSC0003DMT400031843	Potato	plastid	28.72	29.69
Bra027642.1-P	Field mustard	nucleus	28.46	29.66
Bra025511.1-P	Field mustard	nucleus	20.65	29.6
Bra027801.1-P	Field mustard	nucleus	27.96	29.6
CDY64088	Canola	nucleus, plasma membrane, plastid	26.95	29.56
AT1G63480.1	Thale cress	nucleus	26.45	29.09
Zm00001d037425_P001	Maize	nucleus	25.94	28.85
CDY34355	Canola	nucleus	27.46	28.84
Zm00001d026036_P001	Maize	nucleus	28.97	28.61
Zm00001d030053_P003	Maize	plastid	28.72	27.34
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	23.68	26.63
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	28.72	26.57
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	25.69	26.09
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	26.95	25.97
Zm00001d004924_P001	Maize	cytosol	23.17	25.7
Zm00001d015090_P001	Maize	extracellular	17.13	25.66
Zm00001d006034_P003	Maize	nucleus	27.2	25.12
CDY39751	Canola	nucleus	23.68	24.61
CDY46385	Canola	nucleus	23.68	24.61
Zm00001d020950_P001	Maize	cytosol	0.25	0.85

Protein Annotations

EntrezGene:100283776	Gene3D:3.30.1330.80	MapMan:35.1	ProteinID:AQK47399.1	InterPro:AT_hook_DNA-bd_motif	UniProt:B6TLP0
EMBL:EU965905	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF19	SMART:SM00384
SUPFAM:SSF117856	UniParc:UPI000182D8ED	EnsemblPlantsGene:Zm00001d026652	EnsemblPlants:Zm00001d026652_P001	EnsemblPlants:Zm00001d026652_T001	SEG:seg

Description

DNA binding protein

Coordinates

chr10:-:149393077..149397563

Molecular Weight (calculated)

40791.0 Da

IEP (calculated)

10.162

GRAVY (calculated)

-0.497

Length

397 amino acids

Sequence
(BLAST)

001: MDDKELISQS DLQSFYQQQQ QHHRAFGGGG GGQHSPSSLA GMHSVIRPMP NMNMSPSAIL NSIGGGSFTG MQFQMDPPPP PLLHTAAMGA SAPTSTPGAV
101: PAAPTEPVKR KRGRPRKYGP DGTMKQQQLV AAQPRIGPSG PNMISSAGIE DSSQKKRRGR PPGTAKKHQP SPSQGNAFAG SAGTSFTPHI ITASPSEDVA
201: AKIVAFATQS SRAVCVLSAM GSVSRAVLRH PADGSPMARV HASPQPYNNS PAIYEGFYEI MSLTGSYNLA EGSQQEQCQG QGQPSGGLSV TLCSPERNVI
301: GGVLGGPLVA AGTVQVVLGS FHQGGSKSKS KKGGKQQQAP APAAAFSSDS LTGGQEASPS SGHNQNLTPP PPPPSVTGGW PTSGMFDTSI DINSSRG

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.