Factsheet for Bra027801.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45364	Canola	nucleus	97.33	99.45
Bra027642.1-P	Field mustard	nucleus	86.13	84.78
AT1G63470.1	Thale cress	nucleus	81.07	80.42
Bra025511.1-P	Field mustard	nucleus	46.4	62.82
KRH05193	Soybean	plastid	22.67	57.82
VIT_02s0025g03580.t01	Wine grape	nucleus	49.87	54.05
KRH27929	Soybean	nucleus	48.27	51.42
KRH77536	Soybean	nucleus	48.0	50.42
KRH59866	Soybean	nucleus	46.93	50.0
KRH41165	Soybean	nucleus	45.87	48.86
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	42.67	48.05
Solyc08g080960.2.1	Tomato	nucleus	41.87	47.01
PGSC0003DMT400014926	Potato	plastid	42.67	46.38
Solyc08g008030.2.1	Tomato	nucleus	42.67	46.24
GSMUA_Achr8P11400_001	Banana	nucleus	40.8	44.22
Bra007595.1-P	Field mustard	nucleus	39.47	43.4
Bra039309.1-P	Field mustard	nucleus	39.2	43.11
Bra014444.1-P	Field mustard	nucleus	37.87	42.64
GSMUA_Achr11P...	Banana	nucleus	42.13	42.59
GSMUA_Achr11P...	Banana	nucleus	42.4	42.4
Bra022946.1-P	Field mustard	nucleus	29.07	41.6
PGSC0003DMT400031843	Potato	plastid	41.33	40.36
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	21.07	40.31
Bra003446.1-P	Field mustard	nucleus	34.93	38.64
GSMUA_Achr4P30000_001	Banana	nucleus	31.73	36.5
HORVU2Hr1G123730.3	Barley	plastid	20.27	36.19
Zm00001d018515_P002	Maize	nucleus	37.07	35.82
Os02t0824300-01	Rice	nucleus	37.07	35.28
TraesCS7A01G565900.1	Wheat	nucleus	28.0	34.2
OQU85994	Sorghum	nucleus	36.53	34.16
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	35.47	33.25
Bra033121.1-P	Field mustard	nucleus	27.2	32.9
Bra019359.1-P	Field mustard	nucleus	28.27	32.22
Bra021865.1-P	Field mustard	nucleus	29.87	32.0
Bra013646.1-P	Field mustard	nucleus	25.87	31.8
Bra037321.1-P	Field mustard	nucleus	26.67	31.65
Os04t0683900-01	Rice	nucleus	33.33	29.83
TraesCS2B01G604700.1	Wheat	nucleus	31.47	29.28
TraesCS2A01G582300.1	Wheat	nucleus	31.47	29.21
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	31.47	29.14
TraesCS6B01G447600.1	Wheat	nucleus	35.47	28.24
Bra021027.1-P	Field mustard	nucleus	30.67	28.05
Zm00001d026652_P001	Maize	plastid	29.6	27.96
KXG27470	Sorghum	nucleus	30.93	27.75
Bra017536.1-P	Field mustard	nucleus	25.33	26.91
TraesCS6A01G403700.1	Wheat	nucleus	37.87	26.74
Bra040133.1-P	Field mustard	nucleus	26.93	26.37
Bra035899.1-P	Field mustard	nucleus	27.47	26.28
Bra019174.1-P	Field mustard	nucleus	27.73	26.26
Bra025717.1-P	Field mustard	nucleus	21.07	26.07
Bra022555.1-P	Field mustard	nucleus	29.07	26.01
Bra029164.1-P	Field mustard	nucleus	29.33	25.94
Bra020612.1-P	Field mustard	nucleus	24.27	25.85
Bra025716.1-P	Field mustard	nucleus	18.4	25.65
Bra010070.1-P	Field mustard	nucleus	27.2	25.31
Bra013886.1-P	Field mustard	nucleus	25.6	25.2
Bra028265.1-P	Field mustard	nucleus	28.8	25.17
Bra013270.1-P	Field mustard	nucleus	28.27	24.88
Zm00001d001784_P002	Maize	nucleus	28.8	24.83
Bra009999.1-P	Field mustard	nucleus	24.53	24.73
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	25.33	23.69
HORVU7Hr1G122340.3	Barley	nucleus	21.87	23.5
Bra025718.1-P	Field mustard	nucleus, plastid	18.93	23.36

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra027801	EnsemblPlants:Bra027801.1	EnsemblPlants:Bra027801.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	UniProt:M4EG87
PFAM:PF03479	InterPro:PPC_dom	PRINTS:PR00929	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF9
SMART:SM00384	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI0002541A79	SEG:seg	:

Description

AT1G63470 (E=2e-137) | DNA-binding family protein

Coordinates

chrA09:-:6057065..6058781

Molecular Weight (calculated)

39275.4 Da

IEP (calculated)

9.070

GRAVY (calculated)

-0.496

Length

375 amino acids

Sequence
(BLAST)

001: MDGREAMAFP GSHYYLQRGG GGAFTNLSPS QVASGLHAPP GMRPMPNPNV HHPLANNPGP QFPMADHRLS DFGHSIHMGM SSSVAVEQQP PPMMETPMVK
101: KKRGRPRKYA PEGQVSLGLS PMPSSSSASN KAKDSSAVTD PNAPKRARGR PPGTGRKQRL ANLGEWMNTS AGLAFAPHVI SVEAGEDVVS KVMAFSQQRP
201: RALCVMSGTG TVSSVTLRQP ATTEASLTFE GRFEILSLGG SYLVNEGGGP KSRTGGLSVS LSGPEGHVLG GGIGMLIAAS LVQVVACSFV YGGIAKPNNT
301: NKTIKQENKP KEEHDNSEME PTPANAPEEA HETPQDFSAQ GMSGWPGSGE GSVSGSGRSL DSSRNLLTDI DLTRG

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.