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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30710 Canola nucleus 97.26 97.26
Bra035899.1-P Field mustard nucleus 76.31 78.06
Bra010070.1-P Field mustard nucleus 77.81 77.42
AT5G62260.3 Thale cress nucleus 73.32 72.77
KRH34345 Soybean nucleus 33.17 40.3
KRG92455 Soybean nucleus 33.17 40.3
Bra029164.1-P Field mustard nucleus 42.39 40.09
Solyc03g007150.2.1 Tomato nucleus 32.42 40.0
Bra013886.1-P Field mustard nucleus 37.66 39.63
Bra019174.1-P Field mustard nucleus 38.9 39.39
VIT_16s0022g01810.t01 Wine grape cytosol, nucleus, peroxisome 34.41 39.32
Bra028265.1-P Field mustard nucleus 41.65 38.93
KRH09229 Soybean nucleus 33.17 38.66
PGSC0003DMT400071865 Potato plastid 28.93 37.66
KRH38723 Soybean nucleus 32.17 37.5
PGSC0003DMT400079651 Potato nucleus 31.92 36.99
Bra022555.1-P Field mustard nucleus 38.65 36.99
GSMUA_Achr7P06500_001 Banana cytosol, plasma membrane, plastid 30.92 36.9
Bra022946.1-P Field mustard nucleus 23.69 36.26
Bra037321.1-P Field mustard nucleus 28.43 36.08
GSMUA_Achr1P19840_001 Banana nucleus 34.16 35.96
Solyc06g035430.2.1 Tomato nucleus 30.67 35.55
Bra033121.1-P Field mustard nucleus 27.43 35.48
Bra013646.1-P Field mustard nucleus 26.43 34.75
Bra019359.1-P Field mustard nucleus 27.93 34.04
Os08t0118000-01 Rice nucleus 31.42 33.87
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 32.17 33.77
GSMUA_Achr2P03170_001 Banana cytosol, peroxisome, plasma membrane 31.92 32.82
Zm00001d049661_P001 Maize cytosol, peroxisome, plasma membrane 31.42 32.23
KXG24283 Sorghum plastid 31.42 32.06
TraesCS7B01G215600.1 Wheat plastid 31.17 31.73
HORVU7Hr1G075040.1 Barley plastid 30.92 31.55
TraesCS7D01G312100.1 Wheat plastid 30.42 30.73
TraesCS7A01G315100.1 Wheat plastid 30.17 30.4
Bra025716.1-P Field mustard nucleus 19.2 28.62
Bra025511.1-P Field mustard nucleus 19.7 28.52
Bra021865.1-P Field mustard nucleus 24.19 27.71
Bra014444.1-P Field mustard nucleus 21.95 26.43
Bra007595.1-P Field mustard nucleus 22.44 26.39
Bra027642.1-P Field mustard nucleus 24.69 25.98
Bra017536.1-P Field mustard nucleus 22.69 25.78
Bra039309.1-P Field mustard nucleus 21.7 25.51
Bra025717.1-P Field mustard nucleus 19.2 25.41
Bra027801.1-P Field mustard nucleus 23.69 25.33
Bra003446.1-P Field mustard nucleus 20.95 24.78
Bra020612.1-P Field mustard nucleus 20.7 23.58
Bra021027.1-P Field mustard nucleus 23.69 23.17
Bra009999.1-P Field mustard nucleus 21.45 23.12
Bra025718.1-P Field mustard nucleus, plastid 17.46 23.03
Bra040133.1-P Field mustard nucleus 21.45 22.45
Bra013270.1-P Field mustard nucleus 22.94 21.6
Protein Annotations
EnsemblPlants:Bra029271.1EnsemblPlants:Bra029271.1-PEnsemblPlantsGene:Bra029271Gene3D:3.30.1330.80InterPro:IPR005175InterPro:PPC_dom
PANTHER:PTHR31500PANTHER:PTHR31500:SF18PFAM:PF03479PFscan:PS51742SEG:segSUPFAM:SSF117856
UniParc:UPI0002545BBDUniProt:M4EKF4MapMan:35.1:::
Description
AT5G62260 (E=7e-110) | DNA binding
Coordinates
chrA02:+:26207870..26209854
Molecular Weight (calculated)
42361.7 Da
IEP (calculated)
5.375
GRAVY (calculated)
-0.502
Length
401 amino acids
Sequence
(BLAST)
001: MEEKGGVSPS GVITVKGDEE ATEFQQNPSL LQPVGPTTVV SRTPSPPPSP PPPPPPTSVT PVSAAAAPPP LISSAGLDLT KKKRGRPRKY APDGSLNPRY
101: LRPTLSPTPI STSIPFSGDY SHWKQGKAQQ YLPVELIKKP HMFEYGSSPA FPPPPGLSCY VDANFTTHQF TVNAGEDVMM KAMPYSQGSR TICILSATGS
201: ISNVTLRQAA ISGGTLTYEG WFEILSLSGS FMPTEQGGTK GWSGGMSISL AGPNGKIIGG GLAGMLIAAS PVQVIMGSFI VINQAEQTQN KKPRIMEASP
301: PPQQQQHPTF NITNVNSTSP VVATIDDPKQ QTDGGGGMMR PVAQTPFHND NSAMNNFTTT NHGYGNVNTS TNKEEADYAD GGDDDQPDDD SCDTRSLSNG
401: D
Best Arabidopsis Sequence Match ( AT5G62260.3 )
(BLAST)
001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
Arabidopsis Description
AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.