Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY30710 | Canola | nucleus | 97.26 | 97.26 |
Bra035899.1-P | Field mustard | nucleus | 76.31 | 78.06 |
Bra010070.1-P | Field mustard | nucleus | 77.81 | 77.42 |
AT5G62260.3 | Thale cress | nucleus | 73.32 | 72.77 |
KRH34345 | Soybean | nucleus | 33.17 | 40.3 |
KRG92455 | Soybean | nucleus | 33.17 | 40.3 |
Bra029164.1-P | Field mustard | nucleus | 42.39 | 40.09 |
Solyc03g007150.2.1 | Tomato | nucleus | 32.42 | 40.0 |
Bra013886.1-P | Field mustard | nucleus | 37.66 | 39.63 |
Bra019174.1-P | Field mustard | nucleus | 38.9 | 39.39 |
VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 34.41 | 39.32 |
Bra028265.1-P | Field mustard | nucleus | 41.65 | 38.93 |
KRH09229 | Soybean | nucleus | 33.17 | 38.66 |
PGSC0003DMT400071865 | Potato | plastid | 28.93 | 37.66 |
KRH38723 | Soybean | nucleus | 32.17 | 37.5 |
PGSC0003DMT400079651 | Potato | nucleus | 31.92 | 36.99 |
Bra022555.1-P | Field mustard | nucleus | 38.65 | 36.99 |
GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 30.92 | 36.9 |
Bra022946.1-P | Field mustard | nucleus | 23.69 | 36.26 |
Bra037321.1-P | Field mustard | nucleus | 28.43 | 36.08 |
GSMUA_Achr1P19840_001 | Banana | nucleus | 34.16 | 35.96 |
Solyc06g035430.2.1 | Tomato | nucleus | 30.67 | 35.55 |
Bra033121.1-P | Field mustard | nucleus | 27.43 | 35.48 |
Bra013646.1-P | Field mustard | nucleus | 26.43 | 34.75 |
Bra019359.1-P | Field mustard | nucleus | 27.93 | 34.04 |
Os08t0118000-01 | Rice | nucleus | 31.42 | 33.87 |
GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 32.17 | 33.77 |
GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 31.92 | 32.82 |
Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 31.42 | 32.23 |
KXG24283 | Sorghum | plastid | 31.42 | 32.06 |
TraesCS7B01G215600.1 | Wheat | plastid | 31.17 | 31.73 |
HORVU7Hr1G075040.1 | Barley | plastid | 30.92 | 31.55 |
TraesCS7D01G312100.1 | Wheat | plastid | 30.42 | 30.73 |
TraesCS7A01G315100.1 | Wheat | plastid | 30.17 | 30.4 |
Bra025716.1-P | Field mustard | nucleus | 19.2 | 28.62 |
Bra025511.1-P | Field mustard | nucleus | 19.7 | 28.52 |
Bra021865.1-P | Field mustard | nucleus | 24.19 | 27.71 |
Bra014444.1-P | Field mustard | nucleus | 21.95 | 26.43 |
Bra007595.1-P | Field mustard | nucleus | 22.44 | 26.39 |
Bra027642.1-P | Field mustard | nucleus | 24.69 | 25.98 |
Bra017536.1-P | Field mustard | nucleus | 22.69 | 25.78 |
Bra039309.1-P | Field mustard | nucleus | 21.7 | 25.51 |
Bra025717.1-P | Field mustard | nucleus | 19.2 | 25.41 |
Bra027801.1-P | Field mustard | nucleus | 23.69 | 25.33 |
Bra003446.1-P | Field mustard | nucleus | 20.95 | 24.78 |
Bra020612.1-P | Field mustard | nucleus | 20.7 | 23.58 |
Bra021027.1-P | Field mustard | nucleus | 23.69 | 23.17 |
Bra009999.1-P | Field mustard | nucleus | 21.45 | 23.12 |
Bra025718.1-P | Field mustard | nucleus, plastid | 17.46 | 23.03 |
Bra040133.1-P | Field mustard | nucleus | 21.45 | 22.45 |
Bra013270.1-P | Field mustard | nucleus | 22.94 | 21.6 |
Protein Annotations
Description
AT5G62260 (E=7e-110) | DNA binding
Coordinates
chrA02:+:26207870..26209854
Molecular Weight (calculated)
42361.7 Da
IEP (calculated)
5.375
GRAVY (calculated)
-0.502
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKGGVSPS GVITVKGDEE ATEFQQNPSL LQPVGPTTVV SRTPSPPPSP PPPPPPTSVT PVSAAAAPPP LISSAGLDLT KKKRGRPRKY APDGSLNPRY
101: LRPTLSPTPI STSIPFSGDY SHWKQGKAQQ YLPVELIKKP HMFEYGSSPA FPPPPGLSCY VDANFTTHQF TVNAGEDVMM KAMPYSQGSR TICILSATGS
201: ISNVTLRQAA ISGGTLTYEG WFEILSLSGS FMPTEQGGTK GWSGGMSISL AGPNGKIIGG GLAGMLIAAS PVQVIMGSFI VINQAEQTQN KKPRIMEASP
301: PPQQQQHPTF NITNVNSTSP VVATIDDPKQ QTDGGGGMMR PVAQTPFHND NSAMNNFTTT NHGYGNVNTS TNKEEADYAD GGDDDQPDDD SCDTRSLSNG
401: D
101: LRPTLSPTPI STSIPFSGDY SHWKQGKAQQ YLPVELIKKP HMFEYGSSPA FPPPPGLSCY VDANFTTHQF TVNAGEDVMM KAMPYSQGSR TICILSATGS
201: ISNVTLRQAA ISGGTLTYEG WFEILSLSGS FMPTEQGGTK GWSGGMSISL AGPNGKIIGG GLAGMLIAAS PVQVIMGSFI VINQAEQTQN KKPRIMEASP
301: PPQQQQHPTF NITNVNSTSP VVATIDDPKQ QTDGGGGMMR PVAQTPFHND NSAMNNFTTT NHGYGNVNTS TNKEEADYAD GGDDDQPDDD SCDTRSLSNG
401: D
001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
Arabidopsis Description
AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.