Factsheet for Bra010070.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00271	Canola	nucleus	100.0	100.0
Bra035899.1-P	Field mustard	nucleus	83.62	85.97
AT5G62260.3	Thale cress	nucleus	79.16	78.96
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	77.42	77.81
KRH34345	Soybean	nucleus	35.48	43.33
KRG92455	Soybean	nucleus	34.74	42.42
Bra029164.1-P	Field mustard	nucleus	44.42	42.22
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	36.72	42.17
Solyc03g007150.2.1	Tomato	nucleus	33.99	42.15
KRH09229	Soybean	nucleus	35.73	41.86
Bra013886.1-P	Field mustard	nucleus	39.45	41.73
Bra019174.1-P	Field mustard	nucleus	40.2	40.91
KRH38723	Soybean	nucleus	34.74	40.7
PGSC0003DMT400071865	Potato	plastid	30.77	40.26
Bra028265.1-P	Field mustard	nucleus	42.68	40.09
Bra037321.1-P	Field mustard	nucleus	31.02	39.56
PGSC0003DMT400079651	Potato	nucleus	33.5	39.02
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	32.01	38.39
Bra022555.1-P	Field mustard	nucleus	39.7	38.19
Solyc06g035430.2.1	Tomato	nucleus	32.51	37.86
GSMUA_Achr1P19840_001	Banana	nucleus	35.73	37.8
Bra033121.1-P	Field mustard	nucleus	28.78	37.42
Os08t0118000-01	Rice	nucleus	34.49	37.37
Bra022946.1-P	Field mustard	nucleus	24.07	37.02
Bra013646.1-P	Field mustard	nucleus	27.79	36.72
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	33.99	35.86
Bra019359.1-P	Field mustard	nucleus	29.03	35.56
KXG24283	Sorghum	plastid	33.75	34.61
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	33.25	34.36
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	33.0	34.02
TraesCS7B01G215600.1	Wheat	plastid	33.0	33.76
HORVU7Hr1G075040.1	Barley	plastid	32.51	33.33
TraesCS7D01G312100.1	Wheat	plastid	32.51	33.0
TraesCS7A01G315100.1	Wheat	plastid	32.26	32.66
Bra025511.1-P	Field mustard	nucleus	21.34	31.05
Bra021865.1-P	Field mustard	nucleus	26.05	30.0
Bra025716.1-P	Field mustard	nucleus	18.86	28.25
Bra027642.1-P	Field mustard	nucleus	26.55	28.08
Bra007595.1-P	Field mustard	nucleus	23.57	27.86
Bra014444.1-P	Field mustard	nucleus	22.83	27.63
Bra027801.1-P	Field mustard	nucleus	25.31	27.2
Bra039309.1-P	Field mustard	nucleus	22.83	26.98
Bra017536.1-P	Field mustard	nucleus	22.83	26.06
Bra003446.1-P	Field mustard	nucleus	21.59	25.66
Bra025717.1-P	Field mustard	nucleus	19.11	25.41
Bra021027.1-P	Field mustard	nucleus	25.31	24.88
Bra025718.1-P	Field mustard	nucleus, plastid	18.36	24.34
Bra013270.1-P	Field mustard	nucleus	24.57	23.24
Bra020612.1-P	Field mustard	nucleus	20.1	23.01
Bra040133.1-P	Field mustard	nucleus	21.84	22.98
Bra009999.1-P	Field mustard	nucleus	21.09	22.85

Protein Annotations

EnsemblPlants:Bra010070.1	EnsemblPlants:Bra010070.1-P	EnsemblPlantsGene:Bra010070	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI000253F67C	UniProt:M4D0S1	MapMan:35.1	:	:	:

Description

AT5G62260 (E=5e-116) | DNA binding

Coordinates

chrA06:+:19158797..19160803

Molecular Weight (calculated)

42148.5 Da

IEP (calculated)

8.746

GRAVY (calculated)

-0.508

Length

403 amino acids

Sequence
(BLAST)

001: MEDKSGISPS GVITVKGDEA LASRTEFQQS PSFLQFVSPT TVVTPPPPPP PAPTPASTTV NPGSAAAPPP PPISSAGLDL TKKKRGRPRK YAPDGSLNPR
101: ASRPTLSPTP ISSSIPFSGD YNHHSHWKRG KAQQQHVDII KKSHNFEYGS SPAPPPPPPG LSCYVGANFT THQFTVNAGE DVTMKVMPYS QGSRAICILS
201: ATGCISNVTL RQATTSGGTL TYEGRFEILS LSGSFMPTDN GGTKGRSGGM SISLAGPNGK IIGGGLAGML IAAGPVQVVM GSFIVMHQAE QTQKKKPRII
301: EASPPPLQRP PPGFTITTVN STSPLVATVE EPKQQTYGGG GGIMRPISQM PSSFNNDNSG MNNFTTTFQG YGNMNTGTNK DEDDYDDGGD DDSGDTRSLS
401: TSG

Best Arabidopsis Sequence Match ( AT5G62260.3 )
(BLAST)

001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG

Arabidopsis Description

AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.