Factsheet for Os08t0118000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0125200-00
Os08t0118000-01	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	Os02t0125200-00	AT4G12080.1	21798944
AT4G25320.1	Os08t0118000-01	AT4G25320.1	23335615
AT4G25320.1	Os08t0118000-01	AT5G51590.1	23335615
AT4G25320.1	Os08t0118000-01	AT5G51590.1	23335615
AT5G51590.1	Os08t0118000-01	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24283	Sorghum	plastid	80.65	76.34
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	77.42	73.66
HORVU7Hr1G075040.1	Barley	plastid	75.81	71.76
TraesCS7B01G215600.1	Wheat	plastid	75.81	71.57
TraesCS7D01G312100.1	Wheat	plastid	76.08	71.28
TraesCS7A01G315100.1	Wheat	plastid	75.81	70.85
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	55.38	61.31
GSMUA_Achr1P19840_001	Banana	nucleus	58.6	57.22
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	55.38	53.93
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	53.76	51.28
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	44.89	47.58
KRH34345	Soybean	nucleus	41.4	46.67
Solyc03g007150.2.1	Tomato	nucleus	40.32	46.15
KRG92455	Soybean	nucleus	40.86	46.06
Os02t0125200-00	Rice	mitochondrion	45.43	46.05
KRH09229	Soybean	nucleus	41.4	44.77
KRH38723	Soybean	nucleus	40.59	43.9
Os10t0572900-02	Rice	nucleus	29.03	43.03
PGSC0003DMT400079651	Potato	nucleus	39.78	42.77
PGSC0003DMT400071865	Potato	plastid	35.22	42.53
Solyc06g035430.2.1	Tomato	nucleus	36.83	39.6
Os09t0491708-01	Rice	nucleus	37.63	39.0
Os08t0512400-02	Rice	nucleus	36.02	37.85
CDX94457	Canola	nucleus	36.29	35.71
CDY16785	Canola	nucleus	37.1	35.2
Bra035899.1-P	Field mustard	nucleus	37.1	35.2
CDX87241	Canola	nucleus	36.83	35.04
CDX86910	Canola	nucleus	37.37	34.84
CDX89422	Canola	nucleus	35.75	34.64
Bra010070.1-P	Field mustard	nucleus	37.37	34.49
CDY00271	Canola	nucleus	37.37	34.49
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	33.87	34.43
Bra013886.1-P	Field mustard	nucleus	35.22	34.38
Bra019174.1-P	Field mustard	nucleus	36.56	34.34
CDX92693	Canola	nucleus	36.29	34.09
CDY49703	Canola	nucleus	36.56	34.09
AT5G62260.3	Thale cress	nucleus	36.56	33.66
AT4G25320.1	Thale cress	nucleus	36.02	33.17
Os04t0589900-01	Rice	nucleus	33.6	32.98
Os12t0147000-00	Rice	nucleus	33.06	32.28
AT5G51590.1	Thale cress	nucleus	36.29	32.22
CDY30710	Canola	nucleus	34.14	31.67
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	33.87	31.42
Bra029164.1-P	Field mustard	nucleus	35.48	31.13
CDY38874	Canola	nucleus	35.22	30.97
CDY00488	Canola	nucleus	35.22	30.54
CDY32624	Canola	nucleus	34.68	30.42
Bra028265.1-P	Field mustard	nucleus	34.95	30.3
Os06t0326000-01	Rice	nucleus	30.11	29.63
CDX99902	Canola	nucleus	34.68	29.39
Bra022555.1-P	Field mustard	nucleus	32.8	29.12
CDX91598	Canola	nucleus	32.53	28.88
CDY65097	Canola	nucleus	32.53	28.88
Os02t0824300-01	Rice	nucleus	30.11	28.43
Os04t0683900-01	Rice	nucleus	27.96	24.82

Protein Annotations

EMBL:AK068379	EMBL:BR000366	EnsemblPlants:Os08t0118000-01	EnsemblPlantsGene:Os08g0118000	EntrezGene:4344529	Gene3D:3.30.1330.80
InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF15	PFAM:PF03479	PFscan:PS51742
ProteinID:BAD09039.1	ProteinID:BAD33109.1	ProteinID:BAF22780.1	ProteinID:BAT03570.1	ProteinID:EAZ41326.1	RefSeq:XP_015651072.1
SEG:seg	SUPFAM:SSF117856	UniParc:UPI000023ACD3	UniProt:Q6ZJ55	MapMan:35.1	:

Description

AT-hook motif nuclear localized protein 1Protein of unknown function DUF296 domain containing protein. (Os08t0118000-01)

Coordinates

chr8:+:1007427..1011017

Molecular Weight (calculated)

37815.7 Da

IEP (calculated)

9.867

GRAVY (calculated)

-0.120

Length

372 amino acids

Sequence
(BLAST)

001: MEAKSGEASV APVAVATEAT AATVSFQPQA AVAEQGSSSG GVLVPPPPMA AGGGGVVVAA APVAGVVKVG KKRGRPRKYG PDGSLIRPLN ATPISASVPM
101: AASAVGPYTP ASAVGAAMKR GRGRPLDFAS TAKLHHHHQH QHHHQQQQFG FHFDSIGEMV ACSAGANFTP HIITVAPGED VTMKVISFSQ QGPRAICILS
201: ANGVISNVTL RQPDSSGGTL TYEGRFELLS LSGSFMPTEN SGTRSRSGGM SVSLASPDGR VVGGGVAGLL VAASPVQIVV GSFLPSYQME QKNKKPRVEA
301: APALAQTPPA VPISSTDTHS SEQGQHSSVA PRTTNIVTSA YNPDQSWASP AQSIPDSART PSGDVKVTAS GA

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.