Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028265.1-P | Field mustard | nucleus | 90.89 | 93.01 |
| CDY00488 | Canola | nucleus | 90.89 | 93.01 |
| CDY38874 | Canola | nucleus | 79.95 | 82.98 |
| CDY32624 | Canola | nucleus | 79.95 | 82.78 |
| AT5G51590.1 | Thale cress | nucleus | 74.49 | 78.04 |
| CDX91598 | Canola | nucleus | 72.21 | 75.66 |
| CDY65097 | Canola | nucleus | 71.98 | 75.42 |
| CDX92693 | Canola | nucleus | 57.18 | 63.38 |
| CDY49703 | Canola | nucleus | 57.18 | 62.91 |
| CDX94457 | Canola | nucleus | 52.85 | 61.38 |
| CDX89422 | Canola | nucleus | 52.16 | 59.64 |
| KRG92455 | Soybean | nucleus | 34.62 | 46.06 |
| KRH34345 | Soybean | nucleus | 34.62 | 46.06 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 36.45 | 45.58 |
| Solyc03g007150.2.1 | Tomato | nucleus | 32.57 | 44.0 |
| PGSC0003DMT400071865 | Potato | plastid | 30.52 | 43.51 |
| KRH09229 | Soybean | nucleus | 33.49 | 42.73 |
| KRH38723 | Soybean | nucleus | 33.03 | 42.15 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 25.06 | 41.98 |
| CDX84679 | Canola | nucleus | 25.06 | 41.98 |
| CDY16785 | Canola | nucleus | 36.9 | 41.33 |
| CDX87241 | Canola | nucleus | 36.67 | 41.18 |
| CDX86910 | Canola | nucleus | 37.36 | 41.1 |
| CDY00271 | Canola | nucleus | 37.59 | 40.94 |
| PGSC0003DMT400079651 | Potato | nucleus | 32.12 | 40.75 |
| Solyc06g035430.2.1 | Tomato | nucleus | 31.89 | 40.46 |
| CDY30710 | Canola | nucleus | 36.9 | 40.4 |
| CDY07239 | Canola | plasma membrane | 21.18 | 40.26 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 30.75 | 40.18 |
| CDY07238 | Canola | nucleus | 28.7 | 39.87 |
| CDX98767 | Canola | nucleus | 29.39 | 39.21 |
| CDY04392 | Canola | nucleus | 23.69 | 38.81 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 28.93 | 38.6 |
| CDY41291 | Canola | nucleus | 26.65 | 38.36 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 33.03 | 38.06 |
| CDY47428 | Canola | nucleus | 26.42 | 37.54 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 32.12 | 36.91 |
| CDX82971 | Canola | plastid | 17.77 | 36.28 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 30.98 | 34.87 |
| Os08t0118000-01 | Rice | nucleus | 29.39 | 34.68 |
| TraesCS7B01G215600.1 | Wheat | plastid | 29.61 | 32.99 |
| HORVU7Hr1G075040.1 | Barley | plastid | 29.39 | 32.82 |
| TraesCS7D01G312100.1 | Wheat | plastid | 29.61 | 32.75 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 29.16 | 32.74 |
| TraesCS7A01G315100.1 | Wheat | plastid | 29.61 | 32.66 |
| KXG24283 | Sorghum | plastid | 29.16 | 32.57 |
| CDY58791 | Canola | nucleus | 23.46 | 31.4 |
| CDY37070 | Canola | nucleus | 24.37 | 31.38 |
| CDY42495 | Canola | nucleus | 23.92 | 31.07 |
| CDX89109 | Canola | nucleus | 23.69 | 31.04 |
| CDY37704 | Canola | nucleus | 26.42 | 30.93 |
| CDY27354 | Canola | nucleus | 24.15 | 30.37 |
| CDY51561 | Canola | nucleus | 23.23 | 30.0 |
| CDX71746 | Canola | nucleus | 23.46 | 29.94 |
| CDY48928 | Canola | nucleus | 23.46 | 29.94 |
| CDY25500 | Canola | nucleus | 25.06 | 29.73 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 26.42 | 29.15 |
| CDY34355 | Canola | nucleus | 25.06 | 29.1 |
| CDY01503 | Canola | cytosol | 17.08 | 28.96 |
| CDY45364 | Canola | nucleus | 24.15 | 28.88 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 23.69 | 28.73 |
| CDY41028 | Canola | nucleus, plastid | 15.95 | 28.23 |
| CDY41027 | Canola | cytosol | 16.63 | 27.44 |
| CDY26692 | Canola | nucleus | 18.45 | 26.73 |
| CDY26694 | Canola | cytosol, plastid | 15.95 | 26.72 |
| CDY26693 | Canola | plastid | 16.4 | 26.67 |
| CDY01506 | Canola | nucleus | 18.0 | 26.25 |
| CDX78814 | Canola | nucleus | 24.15 | 26.04 |
| CDY46385 | Canola | nucleus | 22.55 | 25.92 |
| CDY39751 | Canola | nucleus | 22.55 | 25.92 |
| CDY52506 | Canola | nucleus | 20.5 | 25.79 |
| CDY30005 | Canola | nucleus | 22.32 | 25.72 |
| CDY44500 | Canola | nucleus | 24.37 | 25.48 |
| CDY21122 | Canola | nucleus | 22.32 | 25.39 |
| CDY08882 | Canola | nucleus | 25.06 | 25.29 |
| CDY05594 | Canola | nucleus | 20.5 | 25.28 |
| CDY52477 | Canola | nucleus | 21.18 | 25.27 |
| CDY65362 | Canola | nucleus | 21.41 | 25.27 |
| CDY68252 | Canola | nucleus | 17.08 | 25.25 |
| CDX76549 | Canola | nucleus | 25.28 | 25.23 |
| CDY03203 | Canola | nucleus | 20.5 | 25.14 |
| CDY26691 | Canola | cytosol, plastid | 17.77 | 25.08 |
| CDY35172 | Canola | nucleus | 20.05 | 24.93 |
| CDY13231 | Canola | nucleus | 20.96 | 22.44 |
Protein Annotations
| EnsemblPlants:CDX99902 | EnsemblPlantsGene:GSBRNA2T00108717001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF18 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDX99902 | ProteinID:CDX99902.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EEEFDF | MapMan:35.1 | : | : | : |
Description
BnaC09g28030D
Coordinates
chrLK031915:+:327031..330048
Molecular Weight (calculated)
46803.3 Da
IEP (calculated)
10.017
GRAVY (calculated)
-0.453
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEREGTSNN NNIISSFGLN QHVAPPPPPT GGGVYHMDPP RSENPNPFPV GLPNTTAASA SASVAAAKAS ENAAPSFSLT MPVENTSSEL KKKRGRPRKY
101: NPDGSLAVTL SPMPISSSVP LTTEFASRKR GRGRGRGRGR GRGRGLVEPP INNNNWVKNP QMFEFENSSP VVRTPEVVTS ASFTPHVLTV NAGEDVTMKI
201: MTFSQQSSRA ICILSANGPV SNVTLRQSMT SGGTLTYEGH FEILSLTGSF IPSETGGTRS RAGGMSVSLA GPDGRVFGGG LAGLFIAAGP VQVVVGRFVA
301: GQEESQQQQQ QMKTQRRERF GIPTSTQASN ISFGGGSAED PKAKYGLNKP VVIQAPPMSA PPVPFSQHEP QPSTNAVQGY YTNNTAEQIR DLFSSLPGED
401: DDVLEGEDGE LAFTVLITVN VIKLNWKNIR TKLRGHMIK
101: NPDGSLAVTL SPMPISSSVP LTTEFASRKR GRGRGRGRGR GRGRGLVEPP INNNNWVKNP QMFEFENSSP VVRTPEVVTS ASFTPHVLTV NAGEDVTMKI
201: MTFSQQSSRA ICILSANGPV SNVTLRQSMT SGGTLTYEGH FEILSLTGSF IPSETGGTRS RAGGMSVSLA GPDGRVFGGG LAGLFIAAGP VQVVVGRFVA
301: GQEESQQQQQ QMKTQRRERF GIPTSTQASN ISFGGGSAED PKAKYGLNKP VVIQAPPMSA PPVPFSQHEP QPSTNAVQGY YTNNTAEQIR DLFSSLPGED
401: DDVLEGEDGE LAFTVLITVN VIKLNWKNIR TKLRGHMIK
001: MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
Arabidopsis Description
AHL4AT-hook motif nuclear-localized protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.