CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71746
CDX73692
CDX78039
CDX89109
CDX90634
CDY25500
CDY29046
CDY34355
CDY42495
CDY45364
CDY48928
CDY51561
CDY58791
CDY64088

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	CDY25500	AT1G63470.1	21798944
AT4G17950.1	CDY34355	AT1G63470.1	21798944
AT4G17950.1	CDY45364	AT1G63470.1	21798944
AT4G17950.1	CDY64088	AT1G63470.1	21798944
AT4G17950.1	CDX73692	AT3G51780.1	21798944
AT4G17950.1	CDX78039	AT3G51780.1	21798944
AT4G17950.1	CDX90634	AT3G51780.1	21798944
AT4G17950.1	CDY29046	AT3G51780.1	21798944
AT4G17950.1	CDX71746	AT3G61310.1	21798944
AT4G17950.1	CDX89109	AT3G61310.1	21798944
AT4G17950.1	CDY42495	AT3G61310.1	21798944
AT4G17950.1	CDY48928	AT3G61310.1	21798944
AT4G17950.1	CDY51561	AT3G61310.1	21798944
AT4G17950.1	CDY58791	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44500	Canola	nucleus	94.84	91.9
Bra013270.1-P	Field mustard	nucleus	83.78	80.05
CDY08882	Canola	nucleus	85.5	80.0
CDX76549	Canola	nucleus	85.01	78.64
AT4G17950.1	Thale cress	nucleus	79.85	74.03
CDY01503	Canola	cytosol	39.31	61.78
CDY41027	Canola	cytosol	39.31	60.15
CDY01506	Canola	nucleus	43.98	59.47
CDY26694	Canola	cytosol, plastid	38.08	59.16
CDY26693	Canola	plastid	39.07	58.89
CDY03203	Canola	nucleus	51.35	58.38
CDY35172	Canola	nucleus	50.37	58.07
CDY68252	Canola	nucleus	42.26	57.91
CDY26692	Canola	nucleus	41.28	55.45
CDY26691	Canola	cytosol, plastid	41.52	54.34
CDY41028	Canola	nucleus, plastid	32.68	53.63
CDX84679	Canola	nucleus	30.22	46.95
CDX79537	Canola	mitochondrion, nucleus, plastid	29.98	46.56
VIT_02s0012g00900.t01	Wine grape	nucleus	40.05	46.18
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	20.88	44.74
Os10t0572900-02	Rice	nucleus	27.52	44.62
KRH28286	Soybean	plastid	34.64	41.59
KRH58200	Soybean	nucleus	36.85	41.44
Solyc04g053090.1.1	Tomato	plastid	16.95	40.83
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	35.14	40.62
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	29.98	39.74
KRH77206	Soybean	nucleus	32.92	39.65
KRH04337	Soybean	nucleus	34.64	39.61
Solyc04g053100.1.1	Tomato	plastid	15.72	38.55
Os04t0589900-01	Rice	nucleus	35.63	38.26
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	17.69	38.1
OQU82226	Sorghum	plastid	32.43	38.04
GSMUA_Achr2P09840_001	Banana	nucleus	33.17	37.82
PGSC0003DMT400052826	Potato	nucleus	33.17	37.5
CDY07239	Canola	plasma membrane	19.9	35.06
CDY37704	Canola	nucleus	31.45	34.13
Zm00001d026036_P001	Maize	nucleus	33.66	34.08
CDY47428	Canola	nucleus	25.55	33.66
CDY07238	Canola	nucleus	26.04	33.54
Zm00001d030053_P003	Maize	plastid	34.15	33.33
CDY04392	Canola	nucleus	21.87	33.21
CDY42495	Canola	nucleus	27.52	33.14
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	33.17	32.77
KXG38867	Sorghum	plastid	33.91	32.62
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	32.92	32.52
TraesCS2A01G449500.1	Wheat	plastid	32.68	32.44
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	34.15	32.4
CDY48928	Canola	nucleus	27.27	32.27
CDX89109	Canola	nucleus	26.54	32.24
CDY51561	Canola	nucleus	26.78	32.06
CDY58791	Canola	nucleus	25.8	32.01
CDX71746	Canola	nucleus	27.03	31.98
CDY37070	Canola	nucleus	26.78	31.96
CDY23720	Canola	extracellular, plasma membrane, vacuole	30.96	31.66
CDY41291	Canola	nucleus	23.59	31.48
Solyc08g006950.2.1	Tomato	nucleus	30.22	31.46
CDY27354	Canola	nucleus	26.78	31.23
CDX94122	Canola	cytosol, nucleus, plasma membrane	25.06	31.0
CDY25500	Canola	nucleus	28.01	30.81
CDX98767	Canola	nucleus	24.82	30.7
CDY64088	Canola	nucleus, plasma membrane, plastid	27.27	30.66
TraesCS1B01G206100.2	Wheat	nucleus	33.42	30.16
CDY45364	Canola	nucleus	27.03	29.97
TraesCS1D01G194900.2	Wheat	nucleus	33.42	29.96
TraesCS1A01G190900.1	Wheat	nucleus	33.42	29.96
CDX82971	Canola	plastid	15.72	29.77
CDY34355	Canola	nucleus	27.52	29.63
HORVU1Hr1G049980.12	Barley	nucleus	33.42	29.31
CDX94457	Canola	nucleus	25.06	26.98
CDY39751	Canola	nucleus	25.31	26.96
CDY46385	Canola	nucleus	25.06	26.7
CDY05594	Canola	nucleus	23.1	26.4
CDY16785	Canola	nucleus	25.31	26.28
CDX87241	Canola	nucleus	25.06	26.09
CDY52506	Canola	nucleus	22.36	26.07
CDX86910	Canola	nucleus	25.55	26.07
CDY00271	Canola	nucleus	25.8	26.05
CDY30005	Canola	nucleus	24.32	25.98
CDY21122	Canola	nucleus	24.57	25.91
CDY52477	Canola	nucleus	23.34	25.82
CDX89422	Canola	nucleus	24.32	25.78
CDY65362	Canola	nucleus	23.34	25.54
CDX92693	Canola	nucleus	24.82	25.51
CDY49703	Canola	nucleus	24.82	25.31
CDY38874	Canola	nucleus	26.04	25.06
CDY00488	Canola	nucleus	26.29	24.94
CDY30710	Canola	nucleus	24.57	24.94
CDX91598	Canola	nucleus	25.55	24.82
CDY32624	Canola	nucleus	25.8	24.76
CDY65097	Canola	nucleus	25.31	24.58
CDX99902	Canola	nucleus	26.04	24.15
CDY13231	Canola	nucleus	22.36	22.2

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	GO:A0A078CRX9	InterPro:AT_hook_DNA-bd_motif	EnsemblPlants:CDX78814	ProteinID:CDX78814
ProteinID:CDX78814.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00131284001
InterPro:IPR005175	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF44
SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI0004EF4A2F	SEG:seg	:	:

Description

BnaA01g08810D

Coordinates

chrLK031816:-:212040..213917

Molecular Weight (calculated)

43058.5 Da

IEP (calculated)

9.824

GRAVY (calculated)

-0.724

Length

407 amino acids

Sequence
(BLAST)

001: MDSRELHHQH QQQQQQQLQQ QLQPPPGMLM GSFNRNPNAS LMGPTSTSQA MMHHHHRSSS LPFGSLSPHH LQMDQKTLES LGFEGSPSTH QQSMRFGIEL
101: QQQVKKKRGR PRKYTPDANN IALALAPTSP LPSASNSYGG GNDGAGDSGG CGGANSTDPP AKRNRGRPPG SGKKQLDALG GTGGVGFTPH VIEVKTGEDI
201: AMKVVAFTHQ GPRAICILSA TGAVSSVMFR QSSNPNGVVK YEGPYEIISM SGSFLNTESN GTVTKTGSLS VSLARPDGQV VGGCVAGMLV AGSQVQVVVG
301: SFVPEVKKPK QSAGRVQNTP EPASAPANML SFGGGGGPGS PRSQGQQQHS SESSEENESN SPLHRGSNNN NNNNHHGLFG NSPPQPLHQM PMQQMYHPHL
401: WPGHNPQ

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.