Factsheet for AT4G17950.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

endoplasmic reticulum 1
golgi 1
extracellular 1
plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78814	Canola	nucleus	74.03	79.85
CDY08882	Canola	nucleus	77.9	78.62
CDX76549	Canola	nucleus	78.13	77.95
CDY44500	Canola	nucleus	74.03	77.38
Bra021027.1-P	Field mustard	nucleus	72.21	77.32
AT5G46640.1	Thale cress	nucleus	60.14	68.39
Bra013270.1-P	Field mustard	nucleus	63.33	65.26
CDY41027	Canola	cytosol	37.13	61.28
CDY26693	Canola	plastid	37.36	60.74
Bra025716.1-P	Field mustard	nucleus	37.13	60.59
CDY01503	Canola	cytosol	35.54	60.23
CDY26694	Canola	cytosol, plastid	35.76	59.92
CDY68252	Canola	nucleus	39.41	58.25
CDY01506	Canola	nucleus	38.72	56.48
CDY26691	Canola	cytosol, plastid	38.95	54.98
Bra025718.1-P	Field mustard	nucleus, plastid	37.59	54.28
CDY26692	Canola	nucleus	37.36	54.13
Bra025717.1-P	Field mustard	nucleus	37.36	54.13
CDY41028	Canola	nucleus, plastid	30.3	53.63
VIT_02s0012g00900.t01	Wine grape	nucleus	39.18	48.73
Os10t0572900-02	Rice	nucleus	26.2	45.82
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	19.82	45.79
KRH58200	Soybean	nucleus	36.45	44.2
KRH28286	Soybean	plastid	32.8	42.48
Solyc04g053090.1.1	Tomato	plastid	15.95	41.42
KRH77206	Soybean	nucleus	31.89	41.42
KRH04337	Soybean	nucleus	33.49	41.29
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	33.03	41.19
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	28.02	40.07
PGSC0003DMT400052826	Potato	nucleus	32.57	39.72
OQU82226	Sorghum	plastid	30.75	38.9
Os04t0589900-01	Rice	nucleus	33.49	38.79
Solyc04g053100.1.1	Tomato	plastid	14.58	38.55
GSMUA_Achr2P09840_001	Banana	nucleus	31.21	38.38
AT2G33620.2	Thale cress	nucleus	30.07	37.61
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	16.17	37.57
AT4G00200.2	Thale cress	nucleus	26.2	36.16
Zm00001d026036_P001	Maize	nucleus	31.89	34.83
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	31.66	33.74
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	31.66	33.74
Zm00001d030053_P003	Maize	plastid	31.89	33.57
TraesCS2A01G449500.1	Wheat	plastid	30.98	33.17
AT3G61310.1	Thale cress	nucleus, plastid	26.65	33.05
KXG38867	Sorghum	plastid	31.66	32.86
Solyc08g006950.2.1	Tomato	nucleus	29.16	32.74
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	30.98	31.7
AT2G45850.1	Thale cress	nucleus	25.06	31.61
AT4G12080.1	Thale cress	nucleus	25.51	31.46
TraesCS1B01G206100.2	Wheat	nucleus	31.66	30.82
AT1G63470.1	Thale cress	nucleus	26.42	30.69
TraesCS1A01G190900.1	Wheat	nucleus	31.66	30.62
TraesCS1D01G194900.2	Wheat	nucleus	31.66	30.62
AT4G22770.1	Thale cress	nucleus	23.23	30.54
HORVU1Hr1G049980.12	Barley	nucleus	31.66	29.96
AT1G63480.1	Thale cress	nucleus	24.37	29.64
AT5G28590.1	Thale cress	mitochondrion	13.44	27.31
AT4G25320.1	Thale cress	nucleus	24.6	26.73
AT5G51590.1	Thale cress	nucleus	25.51	26.73
AT5G62260.3	Thale cress	nucleus	24.15	26.24
AT3G04590.2	Thale cress	nucleus	23.46	25.06

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:827520	UniProt:A0A178UX21	ProteinID:AEE83971.1	EMBL:AJ224119
ArrayExpress:AT4G17950	EnsemblPlantsGene:AT4G17950	RefSeq:AT4G17950	TAIR:AT4G17950	RefSeq:AT4G17950-TAIR-G	EnsemblPlants:AT4G17950.1
TAIR:AT4G17950.1	InterPro:AT_hook_DNA-bd_motif	EMBL:AY054610	EMBL:AY081495	EMBL:BR000349	ProteinID:CAA17138.1
ProteinID:CAB78797.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR005175	RefSeq:NP_567546.1	ProteinID:OAO98153.1	PFAM:PF03479	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500
PANTHER:PTHR31500:SF44	UniProt:Q940I0	SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI00000A6A5F	SEG:seg

Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]

Coordinates

chr4:-:9966720..9969232

Molecular Weight (calculated)

46279.6 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.861

Length

439 amino acids

Sequence
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.