CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
cytosol 1
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01703
KXG27470
OQU85994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	KXG27470	AT1G63470.1	21798944
AT4G17950.1	OQU85994	AT1G63470.1	21798944
AT4G17950.1	EES01703	AT3G51780.1	21798944
AT4G17950.1	KXG27470	AT3G61310.1	21798944
AT4G17950.1	OQU85994	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030053_P003	Maize	plastid	91.96	93.29
Os10t0572900-02	Rice	nucleus	55.32	93.23
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	88.65	87.41
TraesCS1B01G206100.2	Wheat	nucleus	78.72	73.84
TraesCS1A01G190900.1	Wheat	nucleus	78.96	73.57
TraesCS1D01G194900.2	Wheat	nucleus	78.49	73.13
HORVU1Hr1G049980.12	Barley	nucleus	79.43	72.41
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	31.91	71.05
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	49.88	59.94
GSMUA_Achr2P09840_001	Banana	nucleus	49.65	58.82
OQU82226	Sorghum	plastid	43.5	53.03
VIT_02s0012g00900.t01	Wine grape	nucleus	42.55	50.99
Solyc04g053090.1.1	Tomato	plastid	18.44	46.15
PGSC0003DMT400045147	Potato	plastid	35.93	46.06
KXG25625	Sorghum	nucleus	39.72	45.04
OQU89696	Sorghum	nucleus	39.95	44.36
KRH58200	Soybean	nucleus	36.88	43.09
Solyc04g053100.1.1	Tomato	plastid	16.78	42.77
KRH04337	Soybean	nucleus	34.28	40.73
CDY01503	Canola	cytosol	24.82	40.54
OQU76344	Sorghum	nucleus	33.81	39.5
KRH28286	Soybean	plastid	31.44	39.23
Solyc08g077030.2.1	Tomato	nucleus	37.83	39.12
PGSC0003DMT400052826	Potato	nucleus	32.39	38.06
KRH77206	Soybean	nucleus	30.26	37.87
EES07975	Sorghum	cytosol	29.79	34.81
AT5G46640.1	Thale cress	nucleus	31.68	34.72
CDY03203	Canola	nucleus	29.08	34.36
CDX78814	Canola	nucleus	32.62	33.91
Solyc08g006950.2.1	Tomato	nucleus	31.21	33.76
EES15662	Sorghum	cytosol, nucleus, peroxisome	28.37	33.71
CDY35172	Canola	nucleus	27.9	33.43
Bra017536.1-P	Field mustard	nucleus	27.9	33.43
KXG24283	Sorghum	plastid	30.73	33.08
Bra021027.1-P	Field mustard	nucleus	31.91	32.93
OQU85994	Sorghum	nucleus	31.21	32.92
CDY44500	Canola	nucleus	32.39	32.62
CDY41027	Canola	cytosol	20.33	32.33
CDY68252	Canola	nucleus	22.46	31.99
CDY08882	Canola	nucleus	32.62	31.72
AT4G17950.1	Thale cress	nucleus	32.86	31.66
CDY01506	Canola	nucleus	22.46	31.56
CDY41028	Canola	nucleus, plastid	18.44	31.45
KXG29351	Sorghum	plastid	27.66	31.2
CDX76549	Canola	nucleus	32.39	31.14
CDY26693	Canola	plastid	19.86	31.11
CDY26692	Canola	nucleus	22.22	31.02
Bra025717.1-P	Field mustard	nucleus	22.22	31.02
CDY26694	Canola	cytosol, plastid	19.15	30.92
Bra025716.1-P	Field mustard	nucleus	19.62	30.86
Bra025718.1-P	Field mustard	nucleus, plastid	21.75	30.26
Bra013270.1-P	Field mustard	nucleus	30.26	30.05
CDY26691	Canola	cytosol, plastid	21.99	29.9
KXG27470	Sorghum	nucleus	26.48	26.79

Protein Annotations

EnsemblPlants:KXG38867	EnsemblPlantsGene:SORBI_3001G289900	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	ncoils:Coil
PANTHER:PTHR31500	PANTHER:PTHR31500:SF25	PFAM:PF03479	PFscan:PS51742	ProteinID:KXG38867	ProteinID:KXG38867.1
ProteinID:KXG38868.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0001C80B67	UniProt:A0A1B6QLS1	MapMan:35.1

Description

hypothetical protein

Coordinates

chr1:+:56675034..56679586

Molecular Weight (calculated)

43307.2 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.416

Length

423 amino acids

Sequence
(BLAST)

001: METKDVSPLP ATAAAAAAAP VPAPASQPPP APPSMAPPPQ QHQHQHQHQH QPPPPFAQQA APASSPAGSM PGGMRLSFDQ MSGKAAGEQH HHSAPMLYAA
101: SPQSAPGAGA PGAPGANVLG MGELMRKKRG RPRKYAPDGS MALALAPISS ASAGGAAAPG QQQQHGGFSI SSPPSDPNAK RRGRPPGSGK KKQFEALGSW
201: GIAFTPHILS VKAGEDVASK IMTFSQQGPR TVCILSANGA ISNVTLRQPA TSGGLVTYEG RFEIISLSGS FLLAEDGDTR SRTGGLSVAL AGSDGRVLGG
301: CVAGMLMAAT PVQVVVASFI AEGKKSKPAE ARKVEPMAAP PPQMATFVPA PVATSPPSEG TSSASSDDSG SPINHSAMPF NHSSQHQHPH QHQHMPPAYA
401: SGGWSLSVHQ QNRHDSDMKM MSN

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.