Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12080.1 | KXG38867 | AT4G17950.1 | 21798944 |
| AT4G12080.1 | OQU82226 | AT4G17950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015090_P001 | Maize | extracellular | 64.0 | 90.57 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 46.93 | 74.58 |
| Os02t0125200-00 | Rice | mitochondrion | 66.67 | 68.12 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 70.13 | 67.26 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 69.87 | 66.16 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 69.6 | 65.91 |
| PGSC0003DMT400045285 | Potato | cytosol | 21.07 | 53.38 |
| VIT_02s0025g05130.t01 | Wine grape | cytosol, nucleus, peroxisome | 45.6 | 51.82 |
| KRH57315 | Soybean | nucleus | 42.4 | 48.62 |
| PGSC0003DMT400010017 | Potato | plastid | 41.33 | 48.59 |
| Solyc08g079630.2.1 | Tomato | nucleus | 41.33 | 48.29 |
| KXG24283 | Sorghum | plastid | 50.4 | 48.09 |
| KRH04046 | Soybean | nucleus | 42.13 | 47.73 |
| VIT_15s0048g00870.t01 | Wine grape | nucleus | 41.87 | 47.01 |
| PGSC0003DMT400032575 | Potato | plastid | 40.0 | 46.3 |
| CDY07239 | Canola | plasma membrane | 28.0 | 45.45 |
| Solyc08g007530.2.1 | Tomato | nucleus | 39.73 | 45.43 |
| KRH40594 | Soybean | nucleus | 40.0 | 44.51 |
| KRH65263 | Soybean | cytosol, nucleus, plastid | 40.8 | 44.22 |
| KRH76268 | Soybean | cytosol, nucleus, plastid | 40.8 | 44.22 |
| KRH00569 | Soybean | cytosol, peroxisome, plastid | 39.73 | 44.08 |
| Solyc01g091370.2.1 | Tomato | nucleus | 37.33 | 44.03 |
| CDY47428 | Canola | nucleus | 36.0 | 43.69 |
| PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 38.4 | 43.37 |
| CDY04392 | Canola | nucleus | 30.93 | 43.28 |
| Bra013646.1-P | Field mustard | nucleus | 35.2 | 43.28 |
| Bra019359.1-P | Field mustard | nucleus | 37.87 | 43.16 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 37.87 | 43.16 |
| Bra033121.1-P | Field mustard | nucleus | 35.47 | 42.9 |
| CDX98767 | Canola | nucleus | 37.6 | 42.86 |
| CDY41291 | Canola | nucleus | 34.67 | 42.62 |
| CDX82971 | Canola | plastid | 24.0 | 41.86 |
| AT4G12080.1 | Thale cress | nucleus | 39.47 | 41.57 |
| AT4G00200.2 | Thale cress | nucleus | 34.93 | 41.2 |
| CDY07238 | Canola | nucleus | 34.4 | 40.82 |
| Bra037321.1-P | Field mustard | nucleus | 34.4 | 40.82 |
| AT4G22770.1 | Thale cress | nucleus | 36.0 | 40.42 |
| OQU89696 | Sorghum | nucleus | 35.47 | 34.91 |
| KXG25625 | Sorghum | nucleus | 34.13 | 34.32 |
| OQU76344 | Sorghum | nucleus | 32.53 | 33.7 |
| OQU82226 | Sorghum | plastid | 30.4 | 32.85 |
| EES07975 | Sorghum | cytosol | 30.67 | 31.77 |
| EES15662 | Sorghum | cytosol, nucleus, peroxisome | 30.13 | 31.74 |
| KXG38867 | Sorghum | plastid | 31.2 | 27.66 |
| OQU85994 | Sorghum | nucleus | 29.07 | 27.18 |
| KXG27470 | Sorghum | nucleus | 25.87 | 23.21 |
Protein Annotations
| EnsemblPlants:KXG29351 | EnsemblPlantsGene:SORBI_3004G024100 | Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF42 |
| PFAM:PF03479 | PFscan:PS51742 | ProteinID:KXG29351 | ProteinID:KXG29351.1 | SEG:seg | SMART:SM00384 |
| SUPFAM:SSF117856 | UniParc:UPI0003C734A3 | UniProt:A0A194YMD8 | MapMan:35.1 | : | : |
Description
hypothetical protein
Coordinates
chr4:+:1958434..1963629
Molecular Weight (calculated)
37514.7 Da
IEP (calculated)
9.848
GRAVY (calculated)
-0.063
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MEITEASPSP APAAQPAPAP APETATTMTT LASSQPAPAA PEAALSVAAV AGRGDGKRKR GRPRKYGPDG TPLRPLNATP ISASAPDDAG VGQYTPAAAV
101: GAVMKRGRGR PVGFISRVTP ISVAVTAAAP TPAVVVSAPP PAPAPAPHSQ LAPLGELVAC ASGANFTPHI INVAAGEDVN MKVISFSQQG PRAICILSAN
201: GVIANVTLRQ QDSLGGTVTY EGRFELLSLS GSFTPTDSGG TRSRSGGMSV SLAAADGRVI GGGVAGLLVA ASPVQVVVGS FLPSYQMDQN ANKKPVIEIK
301: TVPPPPPATV GFTISSGDMD DAYSGSHQPR SVGAKGSSTM ALFKVENWTA PAPDQAKKTP PPPPTSEAKV PVPGG
101: GAVMKRGRGR PVGFISRVTP ISVAVTAAAP TPAVVVSAPP PAPAPAPHSQ LAPLGELVAC ASGANFTPHI INVAAGEDVN MKVISFSQQG PRAICILSAN
201: GVIANVTLRQ QDSLGGTVTY EGRFELLSLS GSFTPTDSGG TRSRSGGMSV SLAAADGRVI GGGVAGLLVA ASPVQVVVGS FLPSYQMDQN ANKKPVIEIK
301: TVPPPPPATV GFTISSGDMD DAYSGSHQPR SVGAKGSSTM ALFKVENWTA PAPDQAKKTP PPPPTSEAKV PVPGG
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.