Factsheet for Bra033121.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013270.1-P
Bra021027.1-P
Bra025716.1-P
Bra025717.1-P
Bra025718.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12080.1	Bra013270.1-P	AT4G17950.1	21798944
AT4G12080.1	Bra021027.1-P	AT4G17950.1	21798944
AT4G12080.1	Bra025716.1-P	AT4G17950.1	21798944
AT4G12080.1	Bra025717.1-P	AT4G17950.1	21798944
AT4G12080.1	Bra025718.1-P	AT4G17950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47428	Canola	nucleus	93.87	94.17
AT4G12080.1	Thale cress	nucleus	74.84	65.17
Bra013646.1-P	Field mustard	nucleus	56.13	57.05
Bra019359.1-P	Field mustard	nucleus	59.35	55.93
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	57.74	54.24
KRH57315	Soybean	nucleus	57.1	54.13
KRH04046	Soybean	nucleus	57.1	53.47
PGSC0003DMT400032575	Potato	plastid	54.84	52.47
Solyc08g007530.2.1	Tomato	nucleus	55.16	52.13
PGSC0003DMT400010017	Potato	plastid	52.9	51.41
Solyc08g079630.2.1	Tomato	nucleus	52.9	51.09
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	31.94	41.95
Zm00001d015090_P001	Maize	extracellular	34.52	40.38
Bra037321.1-P	Field mustard	nucleus	40.97	40.19
Bra022946.1-P	Field mustard	nucleus	32.9	38.93
KXG29351	Sorghum	plastid	42.9	35.47
TraesCS6A01G083100.1	Wheat	cytosol, nucleus, peroxisome	40.97	32.07
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	40.0	31.71
TraesCS6D01G076900.1	Wheat	nucleus	40.32	31.57
Os02t0125200-00	Rice	mitochondrion	36.77	31.06
Bra025511.1-P	Field mustard	nucleus	27.74	31.05
Bra021865.1-P	Field mustard	nucleus	34.84	30.86
Bra013886.1-P	Field mustard	nucleus	37.1	30.18
Bra019174.1-P	Field mustard	nucleus	38.06	29.8
Bra039309.1-P	Field mustard	nucleus	32.26	29.33
Bra035899.1-P	Field mustard	nucleus	36.45	28.83
Bra010070.1-P	Field mustard	nucleus	37.42	28.78
Bra007595.1-P	Field mustard	nucleus	31.61	28.74
Bra014444.1-P	Field mustard	nucleus	30.0	27.93
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	35.48	27.43
Bra027801.1-P	Field mustard	nucleus	32.9	27.2
Bra029164.1-P	Field mustard	nucleus	37.1	27.12
Bra027642.1-P	Field mustard	nucleus	32.58	26.51
Bra028265.1-P	Field mustard	nucleus	36.45	26.34
Bra025716.1-P	Field mustard	nucleus	22.58	26.02
Bra022555.1-P	Field mustard	nucleus	34.84	25.78
Bra021027.1-P	Field mustard	nucleus	32.26	24.39
Bra025717.1-P	Field mustard	nucleus	23.55	24.09
Bra025718.1-P	Field mustard	nucleus, plastid	23.55	24.01
Bra003446.1-P	Field mustard	nucleus	26.13	23.89
Bra017536.1-P	Field mustard	nucleus	26.77	23.51
Bra013270.1-P	Field mustard	nucleus	31.94	23.24
Bra009999.1-P	Field mustard	nucleus	27.1	22.58
Bra040133.1-P	Field mustard	nucleus	27.42	22.19
Bra020612.1-P	Field mustard	nucleus	25.16	22.16

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EnsemblPlantsGene:Bra033121	EnsemblPlants:Bra033121.1	EnsemblPlants:Bra033121.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0005737	GO:GO:0005739
GO:GO:0043565	GO:GO:0098687	InterPro:IPR005175	UniProt:M4EWD7	PFAM:PF03479	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF7	SUPFAM:SSF117856	UniParc:UPI00025471E3	SEG:seg

Description

AT4G12080 (E=1e-088) | DNA-binding family protein

Coordinates

chrA02:-:16692793..16694938

Molecular Weight (calculated)

32864.5 Da

IEP (calculated)

10.856

GRAVY (calculated)

-0.180

Length

310 amino acids

Sequence
(BLAST)

001: MRWSLPAKLD QRPPPAGNGG GITVVGSDSP SDFHIAARSE SSNPSPKCVA PPLPQSHHTN QLAIVAPPPQ ISMAATTMME GISGVPMKKK RGRPRKYGPE
101: GAVVALSPKP ISSAPAPSHP LPASSHVIDF SASEKRSKMK PTNSFNRTKF HHQVENLGEW VPCSVGGNFT PHVIAVNAGE DVTMKIISFS QQGPRAICVL
201: SANGVISSVT LRQHDSSGGT LTYEGRFEIL SLSGSFMPND IGGTRSRTGG MSISLASPDG RVVGGGVAGL LVAASPVQVN HFLIFPVQRA TAVFNRRLKF
301: HVFVESNRWL

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.