Factsheet for TraesCS6A01G083100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G190900.1
TraesCS1B01G206100.2
TraesCS1D01G194900.2
TraesCS2A01G449500.1
TraesCS2B01G470900.1
TraesCS2D01G448900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12080.1	TraesCS1A01G190900.1	AT4G17950.1	21798944
AT4G12080.1	TraesCS1B01G206100.2	AT4G17950.1	21798944
AT4G12080.1	TraesCS1D01G194900.2	AT4G17950.1	21798944
AT4G12080.1	TraesCS2A01G449500.1	AT4G17950.1	21798944
AT4G12080.1	TraesCS2B01G470900.1	AT4G17950.1	21798944
AT4G12080.1	TraesCS2D01G448900.1	AT4G17950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	94.44	95.65
TraesCS6D01G076900.1	Wheat	nucleus	94.95	94.95
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	56.06	94.07
Zm00001d015090_P001	Maize	extracellular	49.24	73.58
KXG29351	Sorghum	plastid	66.16	69.87
Os02t0125200-00	Rice	mitochondrion	57.58	62.13
PGSC0003DMT400045285	Potato	cytosol	19.95	53.38
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	41.41	49.7
Solyc08g079630.2.1	Tomato	nucleus	38.38	47.35
PGSC0003DMT400010017	Potato	plastid	38.13	47.34
KRH57315	Soybean	nucleus	38.64	46.79
PGSC0003DMT400032575	Potato	plastid	38.13	46.6
KRH04046	Soybean	nucleus	38.89	46.53
TraesCS7A01G315100.1	Wheat	plastid	46.72	46.48
CDY07239	Canola	plasma membrane	27.02	46.32
VIT_15s0048g00870.t01	Wine grape	nucleus	38.64	45.81
Solyc08g007530.2.1	Tomato	nucleus	37.88	45.73
Solyc01g091370.2.1	Tomato	nucleus	36.11	44.97
KRH00569	Soybean	cytosol, peroxisome, plastid	37.88	44.38
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	37.12	44.28
KRH65263	Soybean	cytosol, nucleus, plastid	38.64	44.22
KRH76268	Soybean	cytosol, nucleus, plastid	38.64	44.22
KRH40594	Soybean	nucleus	37.12	43.62
Bra037321.1-P	Field mustard	nucleus	34.09	42.72
CDY07238	Canola	nucleus	34.09	42.72
CDX94122	Canola	cytosol, nucleus, plasma membrane	35.35	42.55
CDY47428	Canola	nucleus	33.08	42.39
Bra019359.1-P	Field mustard	nucleus	35.1	42.25
CDY04392	Canola	nucleus	28.54	42.16
AT4G00200.2	Thale cress	nucleus	33.84	42.14
Bra013646.1-P	Field mustard	nucleus	32.32	41.97
CDX98767	Canola	nucleus	34.85	41.95
CDY41291	Canola	nucleus	31.82	41.31
AT4G12080.1	Thale cress	nucleus	36.87	41.01
Bra033121.1-P	Field mustard	nucleus	32.07	40.97
CDX82971	Canola	plastid	21.97	40.47
AT4G22770.1	Thale cress	nucleus	33.84	40.12
TraesCS7A01G248500.1	Wheat	nucleus	30.3	32.43
TraesCS7A01G134300.1	Wheat	cytosol	15.4	30.96
TraesCS7A01G565900.1	Wheat	nucleus	23.48	30.29
TraesCS5A01G267000.1	Wheat	nucleus, peroxisome, vacuole	28.28	28.21
TraesCS5A01G130500.1	Wheat	plastid	25.76	27.64
TraesCS2A01G449500.1	Wheat	plastid	27.78	26.83
TraesCS1A01G190900.1	Wheat	nucleus	29.04	25.33
TraesCS2A01G582300.1	Wheat	nucleus	23.74	23.27
TraesCS6A01G403700.1	Wheat	nucleus	27.27	20.34
TraesCS5A01G266900.1	Wheat	cytosol	2.02	6.84

Protein Annotations

EnsemblPlants:TraesCS6A01G083100.1	EnsemblPlantsGene:TraesCS6A01G083100	Gene3D:3.30.1330.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:AT_hook_DNA-bd_motif	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF15
PFAM:PF03479	PFscan:PS51742	SEG:seg	SMART:SM00384	SUPFAM:SSF117856	TIGR:cd11378
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:51919574..51923626

Molecular Weight (calculated)

39821.6 Da

IEP (calculated)

10.065

GRAVY (calculated)

-0.166

Length

396 amino acids

Sequence
(BLAST)

001: METAMETSPP AAETKKEPTP PAAETKKGPT PPAVAQPVPE TKKEPTPPAP APSAPPPAPA AAVVVAARGD GKRKRGRPRK YGPDGGLLRP LNATPISASV
101: PDDSGGGHYT PASAVGAAMK RGRGRPVGFI SRAAPVVAMP MPVPVTAATP TPAVVVSTPP PPAPMSSSAA APTQQLVPPL GDVVGCASGA NFTPHILNVA
201: TGEDINMKVI SFSQQGPRAI CILSANGVIS NVTLRQHDSL GGTVTYEGRF ELLSLSGSFT PTEKGGSRDR CGGMSVSLAA ADGRVIGGGV AGLLVAASPV
301: QVVVGSFLPS YQMEQNGKKP VIEMKTVAAQ PAMGFTISSG GDMEDSYSGS QARAGKGASA FRVENWTAQP VASAPPAAEA RRTPSSEAAK VPVSGG

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.