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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G190900.1
TraesCS1B01G206100.2
TraesCS1D01G194900.2
TraesCS2A01G449500.1
TraesCS2B01G470900.1
TraesCS2D01G448900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G12080.1 TraesCS1A01G190900.1 AT4G17950.1 21798944
AT4G12080.1 TraesCS1B01G206100.2 AT4G17950.1 21798944
AT4G12080.1 TraesCS1D01G194900.2 AT4G17950.1 21798944
AT4G12080.1 TraesCS2A01G449500.1 AT4G17950.1 21798944
AT4G12080.1 TraesCS2B01G470900.1 AT4G17950.1 21798944
AT4G12080.1 TraesCS2D01G448900.1 AT4G17950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G083100.1 Wheat cytosol, nucleus, peroxisome 95.65 94.44
HORVU0Hr1G015180.2 Barley cytosol, extracellular 56.78 94.07
TraesCS6D01G076900.1 Wheat nucleus 94.12 92.93
Zm00001d015090_P001 Maize extracellular 49.87 73.58
KXG29351 Sorghum plastid 67.26 70.13
Os02t0125200-00 Rice mitochondrion 58.06 61.85
PGSC0003DMT400045285 Potato cytosol 20.2 53.38
VIT_02s0025g05130.t01 Wine grape cytosol, nucleus, peroxisome 42.2 50.0
Solyc08g079630.2.1 Tomato nucleus 39.9 48.6
PGSC0003DMT400010017 Potato plastid 39.64 48.59
TraesCS7B01G215600.1 Wheat plastid 47.83 47.46
KRH57315 Soybean nucleus 39.64 47.4
KRH04046 Soybean nucleus 39.9 47.13
PGSC0003DMT400032575 Potato plastid 38.62 46.6
CDY07239 Canola plasma membrane 27.37 46.32
VIT_15s0048g00870.t01 Wine grape nucleus 39.39 46.11
Solyc08g007530.2.1 Tomato nucleus 38.36 45.73
Solyc01g091370.2.1 Tomato nucleus 36.57 44.97
KRH00569 Soybean cytosol, peroxisome, plastid 38.36 44.38
PGSC0003DMT400033227 Potato cytosol, nucleus, peroxisome 37.6 44.28
KRH65263 Soybean cytosol, nucleus, plastid 39.13 44.22
KRH76268 Soybean cytosol, nucleus, plastid 39.13 44.22
KRH40594 Soybean nucleus 37.85 43.92
CDY07238 Canola nucleus 34.27 42.41
Bra037321.1-P Field mustard nucleus 34.27 42.41
AT4G00200.2 Thale cress nucleus 34.02 41.82
CDY47428 Canola nucleus 32.74 41.42
CDX94122 Canola cytosol, nucleus, plasma membrane 34.78 41.34
CDY04392 Canola nucleus 28.13 41.04
Bra019359.1-P Field mustard nucleus 34.53 41.03
Bra013646.1-P Field mustard nucleus 31.97 40.98
AT4G12080.1 Thale cress nucleus 37.08 40.73
CDX98767 Canola nucleus 34.27 40.73
CDY41291 Canola nucleus 31.46 40.33
Bra033121.1-P Field mustard nucleus 31.71 40.0
AT4G22770.1 Thale cress nucleus 33.76 39.52
CDX82971 Canola plastid 21.48 39.07
TraesCS7B01G143000.1 Wheat nucleus 30.18 32.69
TraesCS7B01G035400.1 Wheat cytosol 16.62 32.5
TraesCS5B01G130400.1 Wheat plastid 27.37 29.08
TraesCS5B01G129200.1 Wheat plastid 26.85 28.61
TraesCS5B01G266600.1 Wheat endoplasmic reticulum, mitochondrion, nucleus, peroxisome 28.39 28.1
TraesCS2B01G470900.1 Wheat cytosol, nucleus, peroxisome, plastid 28.64 27.18
TraesCS1B01G206100.2 Wheat nucleus 29.16 25.28
TraesCS7B01G035900.1 Wheat nucleus 23.27 25.07
TraesCS2B01G604700.1 Wheat nucleus 23.53 22.83
TraesCS6B01G447600.1 Wheat nucleus 27.37 22.72
TraesCS5B01G266500.1 Wheat cytosol 2.05 6.84
Protein Annotations
EnsemblPlants:TraesCS6B01G114000.1EnsemblPlantsGene:TraesCS6B01G114000Gene3D:3.30.1330.80GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:AT_hook_DNA-bd_motifInterPro:IPR005175InterPro:PPC_domPANTHER:PTHR31500PANTHER:PTHR31500:SF42
PFAM:PF03479PFscan:PS51742SEG:segSMART:SM00384SUPFAM:SSF117856TIGR:cd11378
MapMan:35.1:::::
Description
No Description!
Coordinates
chr6B:-:96470902..96474836
Molecular Weight (calculated)
39079.7 Da
IEP (calculated)
9.973
GRAVY (calculated)
-0.114
Length
391 amino acids
Sequence
(BLAST)
001: METAMETPPP AAETKKEPTP PAAAQPAPET KKEPTPPAPA PAPAPSPPAA PAAVVVAAAR GDGKRKRGRP RKYGPDGGLL RPLNATPISA SVPDDSGGGH
101: YTPASAVGAA MKRGRGRPVG FISRAAPVVA MPMPMPVPVT AATPTPAVVV STPPPPAPMS SSVAAAAAAA PTPPLGDVVG CASGANFTPH ILNVATGEDI
201: NMKVISFSQQ GPRAICILSA NGVISNVTLR QHDSLGGTVT YEGRFELLSL SGSFTPTEKG GSRDRCGGMS VSLAAADGRV IGGGVAGLLV AASPVQVVVG
301: SFLPSYQMEQ NGKKPVIEMK TVAAQPAMGF TISSGGDMED SYSGSQARAG KGASAFRVEN WTAQPVASAP PAAEARRTPS SEAAKVPVSG G
Best Arabidopsis Sequence Match ( AT5G62260.3 )
(BLAST)
001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
Arabidopsis Description
AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.