Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G247300.2 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 98.34 | 95.95 |
| TraesCS7A01G248500.1 | Wheat | nucleus | 98.06 | 95.68 |
| HORVU7Hr1G051150.4 | Barley | nucleus | 95.84 | 94.28 |
| KXG25625 | Sorghum | nucleus | 75.9 | 73.46 |
| Os08t0512400-02 | Rice | nucleus | 71.75 | 73.16 |
| Zm00001d052901_P002 | Maize | nucleus | 71.47 | 69.92 |
| Zm00001d031481_P001 | Maize | nucleus, peroxisome, plasma membrane, plastid | 71.19 | 62.38 |
| Bra022946.1-P | Field mustard | nucleus | 42.11 | 58.02 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 41.83 | 57.63 |
| CDX84679 | Canola | nucleus | 41.83 | 57.63 |
| GSMUA_Achr6P03420_001 | Banana | nucleus | 53.46 | 53.61 |
| VIT_18s0122g00700.t01 | Wine grape | nucleus | 52.35 | 53.54 |
| GSMUA_Achr3P03710_001 | Banana | nucleus | 53.46 | 52.88 |
| PGSC0003DMT400075370 | Potato | nucleus | 49.58 | 50.0 |
| TraesCS5B01G266600.1 | Wheat | endoplasmic reticulum, mitochondrion, nucleus, peroxisome | 54.29 | 49.62 |
| AT2G33620.2 | Thale cress | nucleus | 48.2 | 49.57 |
| GSMUA_Achr9P12360_001 | Banana | extracellular, vacuole | 55.68 | 49.39 |
| Solyc12g094710.1.1 | Tomato | nucleus | 48.48 | 49.02 |
| Bra021865.1-P | Field mustard | nucleus | 46.54 | 48.0 |
| KRH51558 | Soybean | nucleus | 44.32 | 45.07 |
| CDY37704 | Canola | nucleus | 46.54 | 44.8 |
| GSMUA_Achr5P23820_001 | Banana | cytosol, nucleus, plasma membrane | 52.08 | 44.66 |
| KRH60876 | Soybean | nucleus | 43.77 | 44.26 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 46.54 | 42.21 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 42.94 | 37.62 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 42.94 | 34.37 |
| TraesCS7B01G035400.1 | Wheat | cytosol | 18.28 | 33.0 |
| TraesCS7B01G215600.1 | Wheat | plastid | 34.63 | 31.73 |
| TraesCS5B01G130400.1 | Wheat | plastid | 32.13 | 31.52 |
| TraesCS5B01G129200.1 | Wheat | plastid | 31.58 | 31.06 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 32.69 | 30.18 |
| Solyc12g019430.1.1 | Tomato | cytosol, plastid, vacuole | 15.79 | 29.69 |
| TraesCS7B01G035900.1 | Wheat | nucleus | 28.81 | 28.65 |
| PGSC0003DMT400075372 | Potato | cytosol, nucleus, peroxisome | 24.93 | 27.61 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 35.73 | 27.39 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 30.19 | 27.05 |
| TraesCS5B01G266500.1 | Wheat | cytosol | 0.55 | 1.71 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G143000.1 | EnsemblPlantsGene:TraesCS7B01G143000 | Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF13 |
| PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SMART:SM00384 | SUPFAM:SSF117856 | TIGR:cd11378 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:183301961..183304443
Molecular Weight (calculated)
35706.3 Da
IEP (calculated)
11.178
GRAVY (calculated)
-0.247
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRDLFGLP KSQPAPAPAA PAAPPSSAAM QSVRMAYTAD GTPVFAPVSS AVAPPGYQPA GSAAPAHGSS MSAARAAGGN GVAAPPGMGE PSAKKKRGRP
101: RKYGPDAAMS LALVTVPTAA GSTGVTQGAS GRPFSPTLPG NFVPSASPDG GKKRGRPKGS TNKPRVDGAG PAGVGFTPHV LTVQAGEDVS SKIMSFSQNG
201: TRAVCVLSAN GSISNVTLRQ TGTSGGTVTY EGRFEILSLS GSIFVTDNGG QRTRTGGLSV SLAGPDGRLL GGGVAGLLIA ASPIQIVVGS FNAGGKKEPK
301: PQAPPEPVPL KVVPSTGMAA NSPPSRGTLS ESSGGTASPR HQGYASNNNN QPPILSSMPW K
101: RKYGPDAAMS LALVTVPTAA GSTGVTQGAS GRPFSPTLPG NFVPSASPDG GKKRGRPKGS TNKPRVDGAG PAGVGFTPHV LTVQAGEDVS SKIMSFSQNG
201: TRAVCVLSAN GSISNVTLRQ TGTSGGTVTY EGRFEILSLS GSIFVTDNGG QRTRTGGLSV SLAGPDGRLL GGGVAGLLIA ASPIQIVVGS FNAGGKKEPK
301: PQAPPEPVPL KVVPSTGMAA NSPPSRGTLS ESSGGTASPR HQGYASNNNN QPPILSSMPW K
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.