Factsheet for Os08t0512400-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25625	Sorghum	nucleus	77.4	73.46
TraesCS7D01G247300.2	Wheat	mitochondrion, nucleus, peroxisome, plastid	76.27	72.97
TraesCS7A01G248500.1	Wheat	nucleus	75.71	72.43
HORVU7Hr1G051150.4	Barley	nucleus	74.58	71.93
TraesCS7B01G143000.1	Wheat	nucleus	73.16	71.75
Zm00001d052901_P002	Maize	nucleus	72.6	69.65
Os09t0491708-01	Rice	nucleus	70.34	69.36
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	74.29	63.84
CDX84679	Canola	nucleus	44.92	60.69
Bra022946.1-P	Field mustard	nucleus	44.63	60.31
CDX79537	Canola	mitochondrion, nucleus, plastid	44.63	60.31
GSMUA_Achr6P03420_001	Banana	nucleus	59.32	58.33
GSMUA_Achr3P03710_001	Banana	nucleus	59.32	57.53
VIT_18s0122g00700.t01	Wine grape	nucleus	56.78	56.94
AT2G33620.2	Thale cress	nucleus	52.26	52.71
PGSC0003DMT400075370	Potato	nucleus	53.11	52.51
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	59.6	51.84
Os10t0572900-02	Rice	nucleus	36.72	51.79
Solyc12g094710.1.1	Tomato	nucleus	51.69	51.26
Bra021865.1-P	Field mustard	nucleus	50.56	51.14
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	57.34	48.22
CDY37704	Canola	nucleus	50.56	47.73
KRH51558	Soybean	nucleus	46.33	46.2
KRH60876	Soybean	nucleus	46.05	45.66
CDY23720	Canola	extracellular, plasma membrane, vacuole	50.28	44.72
Os04t0589900-01	Rice	nucleus	45.76	42.74
Os06t0326000-01	Rice	nucleus	43.5	40.74
Os08t0118000-01	Rice	nucleus	37.85	36.02
Os11t0149100-01	Rice	cytosol, nucleus, peroxisome	35.31	34.15
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	17.8	32.81
Os12t0147000-00	Rice	nucleus	33.9	31.5
Os02t0824300-01	Rice	nucleus	35.03	31.47
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	27.68	30.06
Os02t0125200-00	Rice	mitochondrion	31.07	29.97
Os04t0683900-01	Rice	nucleus	31.64	26.73

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:4346014	InterPro:AT_hook_DNA-bd_motif	ProteinID:BAD10062.1	ProteinID:BAT06211.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	EnsemblPlantsGene:Os08g0512400
EnsemblPlants:Os08t0512400-02	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF13
UniProt:Q6Z8N9	SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI000023AFD9	RefSeq:XP_015650675.1	SEG:seg

Description

Protein of unknown function DUF296 domain containing protein. (Os08t0512400-01);Similar to AT-hook protein 1. (Os08t0512400-02)

Coordinates

chr8:-:25405005..25408253

Molecular Weight (calculated)

35264.8 Da

IEP (calculated)

10.743

GRAVY (calculated)

-0.227

Length

354 amino acids

Sequence
(BLAST)

001: MEVRSEQGLM AGRDLFGMPK SPPAAAAAPP QSVRMAYTSD GTPVFAPVSA AVSAPPGYQP GGAAGGNGAA ALADSGGEPV AKKKRGRPRK YGPDGSMSLG
101: LVTSPTAAAS TPVAQGVPGP FSPTQPKPPA SFLSSGWPDG VKKRGRPKGS TNKPRIDAVG SAGVGFTPHV ITVLAGEDVS AKIMSFAQHG NRAVCVLSAN
201: GAISNVTLRQ TATSGGTVTY EGRFEILSLS GSFLLTDHGG QRSRTGGLSV SLAGPDGRLL GGGVAGLLIA ATPVQIVVGS FNSEGKKEPK QHAHSEPASA
301: PSKAVPTAGM GPNSPPSRGT LSESSGGAGS PLHPGIAPPS SNSQPPFLSS MPWK

Best Arabidopsis Sequence Match ( AT2G33620.3 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.