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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:peroxisome
nucleus: 23303719
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os11t0149100-01 Rice cytosol, nucleus, peroxisome 77.69 80.87
Zm00001d052495_P001 Maize cytosol, nucleus, peroxisome 68.77 74.22
EES15662 Sorghum cytosol, nucleus, peroxisome 69.29 74.16
EES07975 Sorghum cytosol 69.29 72.93
TraesCS5A01G130500.1 Wheat plastid 70.6 72.9
TraesCS5D01G138000.1 Wheat plastid 70.08 72.75
TraesCS5B01G130400.1 Wheat plastid 70.08 72.55
Zm00001d004924_P001 Maize cytosol 67.98 72.35
HORVU5Hr1G041290.4 Barley cytosol, nucleus, peroxisome 70.6 72.12
TraesCS5B01G129200.1 Wheat plastid 69.03 71.66
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 38.32 43.45
Os10t0572900-02 Rice nucleus 28.61 43.43
GSMUA_Achr2P20250_001 Banana cytosol, peroxisome, plastid 38.85 40.33
GSMUA_Achr6P13410_001 Banana cytosol, nucleus, peroxisome 38.06 39.62
VIT_08s0007g04020.t01 Wine grape nucleus 36.48 38.5
Os09t0491708-01 Rice nucleus 32.81 34.82
Os08t0512400-02 Rice nucleus 31.5 33.9
KRH20019 Soybean nucleus 33.6 33.77
Os08t0118000-01 Rice nucleus 32.28 33.06
Os04t0589900-01 Rice nucleus 32.81 32.98
KRH25156 Soybean cytosol 21.52 31.54
KRH32644 Soybean plastid 32.55 31.31
PGSC0003DMT400007056 Potato nucleus 32.55 30.54
GSMUA_Achr3P03040_001 Banana nucleus, peroxisome, plasma membrane 37.53 29.55
Solyc09g008940.2.1 Tomato nucleus 32.28 29.5
Os06t0326000-01 Rice nucleus 28.61 28.84
Os02t0824300-01 Rice nucleus 29.66 28.68
Os02t0125200-00 Rice mitochondrion 27.56 28.61
KRH30520 Soybean nucleus 24.41 25.14
Os04t0683900-01 Rice nucleus 26.25 23.87
Protein Annotations
Gene3D:3.30.1330.80MapMan:35.1EntrezGene:4351497UniProt:A0A0P0Y6X5ProteinID:BAT15889.1ncoils:Coil
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488InterPro:IPR005175EnsemblPlantsGene:Os12g0147000
EnsemblPlants:Os12t0147000-00PFAM:PF03479InterPro:PPC_domPFscan:PS51742PANTHER:PTHR31500PANTHER:PTHR31500:SF24
SUPFAM:SSF117856UniParc:UPI00039398C6RefSeq:XP_015618627.1RefSeq:XP_015618628.1RefSeq:XP_015618629.1RefSeq:XP_015618630.1
SEG:seg:::::
Description
Similar to DNA binding protein. (Os12t0147000-00)
Coordinates
chr12:+:2305477..2309498
Molecular Weight (calculated)
38486.6 Da
IEP (calculated)
9.395
GRAVY (calculated)
-0.099
Length
381 amino acids
Sequence
(BLAST)
001: MEGSRSRECI AVASGHEAAA APAGYGLFIR TADCSMAEAA AQQEAAAAAK GYRSSPSSPS SMSPTPSPPP AAAVHGGGGA EDAAAAAIAT PAARSLGAGD
101: SGSMQVSGHG EHAGLSSRRR RGRPKGSGRR QILANLGEWY ALSAGGSFTP HVIIVATGED VAARIMSFSQ KGPRSVCILA ANGTISNVVL NQPGSSGSTF
201: SYEGCFEILQ LTGSFTIAEE GVRRRTGGLS VSLAGPDGRV VGGVVAGMLR AASPIQVIVG SFLPNNLKQH QRRMGLHPQP SAAPAFPAPM APLHPPPVLT
301: AAMPISQAAP GNNGCRSPQV SISSMPPQAH AGVEQSRGAM NLNSSSSSTG FAMVGWPAAA SSQSMVHRPS PDINVCLTPQ E
Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.