Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
Predictors | GFP | MS/MS | Papers | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU1Hr1G049980.12 | |
HORVU2Hr1G105800.13 | |
HORVU7Hr1G065300.2 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G12080.1 | HORVU1Hr1G049980.12 | AT4G17950.1 | 21798944 |
AT4G12080.1 | HORVU2Hr1G105800.13 | AT4G17950.1 | 21798944 |
AT4G12080.1 | HORVU7Hr1G065300.2 | AT4G17950.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d015090_P001 | Maize | extracellular | 72.03 | 64.15 |
TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 94.07 | 56.78 |
TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 94.07 | 56.06 |
TraesCS6D01G076900.1 | Wheat | nucleus | 93.22 | 55.56 |
PGSC0003DMT400045285 | Potato | cytosol | 31.78 | 50.68 |
Os02t0125200-00 | Rice | mitochondrion | 76.27 | 49.05 |
KXG29351 | Sorghum | plastid | 74.58 | 46.93 |
CDY07239 | Canola | plasma membrane | 44.49 | 45.45 |
VIT_02s0025g05130.t01 | Wine grape | cytosol, nucleus, peroxisome | 52.97 | 37.88 |
HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 30.08 | 37.57 |
PGSC0003DMT400010017 | Potato | plastid | 50.0 | 36.99 |
Solyc08g079630.2.1 | Tomato | nucleus | 50.0 | 36.76 |
KRH57315 | Soybean | nucleus | 50.85 | 36.7 |
KRH04046 | Soybean | nucleus | 50.85 | 36.25 |
PGSC0003DMT400032575 | Potato | plastid | 49.58 | 36.11 |
Solyc08g007530.2.1 | Tomato | nucleus | 49.15 | 35.37 |
KRH76268 | Soybean | cytosol, nucleus, plastid | 51.27 | 34.97 |
KRH65263 | Soybean | cytosol, nucleus, plastid | 51.27 | 34.97 |
Solyc01g091370.2.1 | Tomato | nucleus | 47.03 | 34.91 |
VIT_15s0048g00870.t01 | Wine grape | nucleus | 48.73 | 34.43 |
KRH00569 | Soybean | cytosol, peroxisome, plastid | 48.73 | 34.02 |
KRH40594 | Soybean | nucleus | 48.31 | 33.83 |
PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 47.46 | 33.73 |
HORVU7Hr1G075040.1 | Barley | plastid | 55.93 | 33.59 |
CDY07238 | Canola | nucleus | 44.49 | 33.23 |
Bra037321.1-P | Field mustard | nucleus | 44.49 | 33.23 |
AT4G00200.2 | Thale cress | nucleus | 44.49 | 33.02 |
AT4G12080.1 | Thale cress | nucleus | 49.58 | 32.87 |
CDY47428 | Canola | nucleus | 42.37 | 32.36 |
CDX94122 | Canola | cytosol, nucleus, plasma membrane | 44.92 | 32.22 |
Bra033121.1-P | Field mustard | nucleus | 41.95 | 31.94 |
Bra019359.1-P | Field mustard | nucleus | 44.49 | 31.91 |
CDX98767 | Canola | nucleus | 44.07 | 31.61 |
Bra013646.1-P | Field mustard | nucleus | 39.41 | 30.49 |
HORVU2Hr1G123730.3 | Barley | plastid | 27.12 | 30.48 |
AT4G22770.1 | Thale cress | nucleus | 42.37 | 29.94 |
CDY04392 | Canola | nucleus | 33.9 | 29.85 |
CDY41291 | Canola | nucleus | 38.56 | 29.84 |
HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 36.44 | 28.01 |
HORVU7Hr1G027950.1 | Barley | extracellular, mitochondrion, plasma membrane | 25.0 | 24.89 |
CDX82971 | Canola | plastid | 22.46 | 24.65 |
HORVU7Hr1G051150.4 | Barley | nucleus | 37.71 | 24.25 |
HORVU5Hr1G041290.4 | Barley | cytosol, nucleus, peroxisome | 36.44 | 23.06 |
HORVU5Hr1G073550.1 | Barley | nucleus, peroxisome, plastid | 35.59 | 21.43 |
HORVU1Hr1G049980.12 | Barley | nucleus | 38.56 | 19.61 |
HORVU7Hr1G122340.3 | Barley | nucleus | 28.39 | 19.2 |
HORVU7Hr1G028110.15 | Barley | plasma membrane | 24.58 | 15.63 |
Protein Annotations
EnsemblPlants:HORVU0Hr1G015180.2 | EnsemblPlantsGene:HORVU0Hr1G015180 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
PANTHER:PTHR31500:SF15 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI000B469737 |
UniProt:A0A287E224 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:83380501..83384523
Molecular Weight (calculated)
23819.4 Da
IEP (calculated)
8.069
GRAVY (calculated)
0.099
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: APVSVAAVAA PTPQHLAPPL GDVVGCASGA NFTPHILNVA TGEDINMKVI SFSQQGPRAI CILSANGVIS NVTLRQHDSL GGTVTYEGRF ELLSLSGSFT
101: PTEKGGTRDR CGGMSVSLAA ADGRVIGGGV AGLLVAASPV QVVVGSFLPS YQMEQNGKKP VIEMKTVAAQ PTVGFTISSG GDMADSYSGS QARAGKGASA
201: FRVENWTAQP VASAPPAAEA RRTPSSEVIK VPVSGG
101: PTEKGGTRDR CGGMSVSLAA ADGRVIGGGV AGLLVAASPV QVVVGSFLPS YQMEQNGKKP VIEMKTVAAQ PTVGFTISSG GDMADSYSGS QARAGKGASA
201: FRVENWTAQP VASAPPAAEA RRTPSSEVIK VPVSGG
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.