Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g00900.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G12080.1 | VIT_02s0012g00900.t01 | AT4G17950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57315 | Soybean | nucleus | 75.45 | 76.15 |
| KRH04046 | Soybean | nucleus | 75.15 | 74.92 |
| PGSC0003DMT400010017 | Potato | plastid | 67.27 | 69.59 |
| Solyc08g079630.2.1 | Tomato | nucleus | 67.27 | 69.16 |
| PGSC0003DMT400032575 | Potato | plastid | 67.88 | 69.14 |
| Solyc08g007530.2.1 | Tomato | nucleus | 67.58 | 67.99 |
| CDY04392 | Canola | nucleus | 49.39 | 60.82 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 60.0 | 60.18 |
| VIT_15s0048g00870.t01 | Wine grape | nucleus | 60.61 | 59.88 |
| AT4G12080.1 | Thale cress | nucleus | 64.55 | 59.83 |
| Bra019359.1-P | Field mustard | nucleus | 59.39 | 59.57 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 63.33 | 59.54 |
| CDX98767 | Canola | nucleus | 59.09 | 59.27 |
| CDY47428 | Canola | nucleus | 55.15 | 58.9 |
| Bra033121.1-P | Field mustard | nucleus | 54.24 | 57.74 |
| AT4G22770.1 | Thale cress | nucleus | 57.58 | 56.89 |
| Bra013646.1-P | Field mustard | nucleus | 52.42 | 56.72 |
| CDY41291 | Canola | nucleus | 51.82 | 56.07 |
| CDX82971 | Canola | plastid | 34.55 | 53.02 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 37.88 | 52.97 |
| Zm00001d015090_P001 | Maize | extracellular | 41.82 | 52.08 |
| KXG29351 | Sorghum | plastid | 51.82 | 45.6 |
| VIT_15s0046g02930.t01 | Wine grape | nucleus, plastid | 44.55 | 42.61 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 50.0 | 42.2 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 49.7 | 41.41 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 48.79 | 40.66 |
| VIT_18s0122g00700.t01 | Wine grape | nucleus | 43.33 | 40.51 |
| Os02t0125200-00 | Rice | mitochondrion | 44.55 | 40.05 |
| VIT_08s0007g04020.t01 | Wine grape | nucleus | 43.64 | 39.89 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 40.61 | 38.73 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 39.7 | 37.11 |
| VIT_14s0081g00620.t01 | Wine grape | nucleus | 32.73 | 30.25 |
Protein Annotations
| EntrezGene:100244375 | wikigene:100244375 | Gene3D:3.30.1330.80 | MapMan:35.1 | EMBL:AM424107 | ProteinID:CAN62363 |
| ProteinID:CAN62363.1 | ProteinID:CCB58436 | ProteinID:CCB58436.1 | UniProt:F6HUL3 | EMBL:FN596251 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR005175 | EntrezGene:LOC100244375 | wikigene:LOC100244375 | PFAM:PF03479 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF7 | SUPFAM:SSF117856 | UniParc:UPI0002108BAB |
| ArrayExpress:VIT_02s0025g05130 | EnsemblPlantsGene:VIT_02s0025g05130 | EnsemblPlants:VIT_02s0025g05130.t01 | RefSeq:XP_002274756 | RefSeq:XP_002274756.1 | SEG:seg |
Description
No Description!
Coordinates
chr2:+:4608975..4616977
Molecular Weight (calculated)
33425.8 Da
IEP (calculated)
10.330
GRAVY (calculated)
-0.172
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGREGASGA GGGAVTVVGS DAPSEYHVAA RTENPSPVAG SSPAVTPAVA VPQPAPAPAP APVPAAAVAM MPAKKKRGRP RKYGPDGTVT MALSPKPISS
101: SAPGPPVIDF SVEKRGKIRP VGSASKSKME LENLGEWVAC SVGANFTPHI ITVNSGEDVT MKIISFSQQG PRAICILSAN GVISSVTLRQ PDSSGGTLTY
201: EGRFEILSLS GSFMPSDSGG TRSRSGGMSV SLASPDGRVV GGGVAGLLVA ASPVQVVVGS FLTGNQHEQK PKKQKIEPIS AARPTAAVPI STTPKPNLSS
301: STSFRGDNWS PLPSDSRNKA TDINVSLPGG
101: SAPGPPVIDF SVEKRGKIRP VGSASKSKME LENLGEWVAC SVGANFTPHI ITVNSGEDVT MKIISFSQQG PRAICILSAN GVISSVTLRQ PDSSGGTLTY
201: EGRFEILSLS GSFMPSDSGG TRSRSGGMSV SLASPDGRVV GGGVAGLLVA ASPVQVVVGS FLTGNQHEQK PKKQKIEPIS AARPTAAVPI STTPKPNLSS
301: STSFRGDNWS PLPSDSRNKA TDINVSLPGG
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.