Factsheet for Zm00001d015090_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d026036_P001
Zm00001d030053_P003
Zm00001d047042_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12080.1	Zm00001d026036_P001	AT4G17950.1	21798944
AT4G12080.1	Zm00001d030053_P003	AT4G17950.1	21798944
AT4G12080.1	Zm00001d047042_P004	AT4G17950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G015180.2	Barley	cytosol, extracellular	64.15	72.03
KXG29351	Sorghum	plastid	90.57	64.0
Os02t0125200-00	Rice	mitochondrion	83.4	60.22
PGSC0003DMT400045285	Potato	cytosol	28.68	51.35
TraesCS6B01G114000.1	Wheat	cytosol, nucleus, peroxisome	73.58	49.87
TraesCS6A01G083100.1	Wheat	cytosol, nucleus, peroxisome	73.58	49.24
TraesCS6D01G076900.1	Wheat	nucleus	72.45	48.48
CDY07239	Canola	plasma membrane	38.87	44.59
VIT_02s0025g05130.t01	Wine grape	cytosol, nucleus, peroxisome	52.08	41.82
PGSC0003DMT400010017	Potato	plastid	48.68	40.44
Solyc08g079630.2.1	Tomato	nucleus	48.68	40.19
KRH57315	Soybean	nucleus	48.68	39.45
VIT_15s0048g00870.t01	Wine grape	nucleus	49.43	39.22
KRH04046	Soybean	nucleus	48.68	38.97
PGSC0003DMT400032575	Potato	plastid	47.17	38.58
Solyc08g007530.2.1	Tomato	nucleus	46.42	37.5
KRH76268	Soybean	cytosol, nucleus, plastid	48.3	36.99
KRH65263	Soybean	cytosol, nucleus, plastid	48.3	36.99
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	53.21	36.06
KRH00569	Soybean	cytosol, peroxisome, plastid	45.28	35.5
AT4G00200.2	Thale cress	nucleus	42.26	35.22
Solyc01g091370.2.1	Tomato	nucleus	42.26	35.22
KRH40594	Soybean	nucleus	44.53	35.01
CDY47428	Canola	nucleus	40.75	34.95
CDX94122	Canola	cytosol, nucleus, plasma membrane	43.02	34.65
Bra033121.1-P	Field mustard	nucleus	40.38	34.52
CDY07238	Canola	nucleus	41.13	34.49
Bra037321.1-P	Field mustard	nucleus	41.13	34.49
Bra019359.1-P	Field mustard	nucleus	42.64	34.35
CDX98767	Canola	nucleus	42.26	34.04
AT4G12080.1	Thale cress	nucleus	45.66	33.99
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	42.26	33.73
Bra013646.1-P	Field mustard	nucleus	38.49	33.44
AT4G22770.1	Thale cress	nucleus	41.89	33.23
CDY04392	Canola	nucleus	33.21	32.84
CDY41291	Canola	nucleus	37.74	32.79
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	40.75	30.59
Zm00001d004924_P001	Maize	cytosol	40.38	29.89
CDX82971	Canola	plastid	23.02	28.37
Zm00001d020951_P002	Maize	cytosol, nucleus, peroxisome, plastid	35.09	27.76
Zm00001d052901_P002	Maize	nucleus	35.47	25.47
Zm00001d037425_P001	Maize	nucleus	33.21	24.65
Zm00001d006034_P003	Maize	nucleus	39.62	24.42
Zm00001d026036_P001	Maize	nucleus	34.72	22.89
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	35.09	22.57
Zm00001d030053_P003	Maize	plastid	35.47	22.54
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	35.47	21.91
Zm00001d018515_P002	Maize	nucleus	32.08	21.91
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	31.32	20.75
Zm00001d026652_P001	Maize	plastid	25.66	17.13
Zm00001d001784_P002	Maize	nucleus	26.04	15.86
Zm00001d020950_P001	Maize	cytosol	2.26	5.13

Protein Annotations

EMBL:BT034978	EnsemblPlants:Zm00001d015090_P001	EnsemblPlants:Zm00001d015090_T001	EnsemblPlantsGene:Zm00001d015090	EntrezGene:100192880	Gene3D:3.30.1330.80
InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF15	PFAM:PF03479	PFscan:PS51742
ProteinID:AQK68056.1	SEG:seg	SUPFAM:SSF117856	UniParc:UPI00017B6521	UniProt:B4FCZ0	MapMan:35.1

Description

AT-hook motif nuclear-localized protein 1

Coordinates

chr5:+:75184345..75190032

Molecular Weight (calculated)

26538.7 Da

IEP (calculated)

9.610

GRAVY (calculated)

0.114

Length

265 amino acids

Sequence
(BLAST)

001: MKRGRGRPVG FVSRATPISM AVTAAAPTPA VVVSAPTPAL HSPLGPLGEL VACASGANFT PHIINVAAGE DVSMKVISFS QQGPRAICIL SANGVIANVT
101: LRQQDSLGGT VTYEGRFELL SLSGSFTPTD SGGGTRSRSG GMSVSLAAAD GRVIGGGVAG LLVAASPVQV VVGSFLPSYQ LDQGANKKPV IEITTVPPAP
201: VGFTISSGDM DDAYSGSQHP RSAAAKGGST TTALFKVENW TAPAPAPDQA RKAPAPEAKV PVPGG

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.