Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033227 | Potato | cytosol, nucleus, peroxisome | 96.23 | 92.17 |
| VIT_15s0048g00870.t01 | Wine grape | nucleus | 56.92 | 54.19 |
| KRH76268 | Soybean | cytosol, nucleus, plastid | 55.97 | 51.45 |
| KRH00569 | Soybean | cytosol, peroxisome, plastid | 53.77 | 50.59 |
| KRH65263 | Soybean | cytosol, nucleus, plastid | 55.03 | 50.58 |
| CDY07239 | Canola | plasma membrane | 36.48 | 50.22 |
| KRH40594 | Soybean | nucleus | 53.14 | 50.15 |
| Solyc08g079630.2.1 | Tomato | nucleus | 50.31 | 49.84 |
| Solyc08g007530.2.1 | Tomato | nucleus | 49.06 | 47.56 |
| AT4G00200.2 | Thale cress | nucleus | 47.17 | 47.17 |
| HORVU0Hr1G015180.2 | Barley | cytosol, extracellular | 34.91 | 47.03 |
| Solyc03g007150.2.1 | Tomato | nucleus | 46.54 | 45.54 |
| Bra037321.1-P | Field mustard | nucleus | 44.97 | 45.25 |
| CDY07238 | Canola | nucleus | 44.97 | 45.25 |
| Zm00001d015090_P001 | Maize | extracellular | 35.22 | 42.26 |
| Solyc04g053090.1.1 | Tomato | plastid | 21.38 | 40.24 |
| Solyc04g053100.1.1 | Tomato | plastid | 20.44 | 39.16 |
| Solyc06g035430.2.1 | Tomato | nucleus | 41.51 | 38.15 |
| KXG29351 | Sorghum | plastid | 44.03 | 37.33 |
| Solyc01g094460.2.1 | Tomato | nucleus | 39.31 | 36.87 |
| TraesCS6B01G114000.1 | Wheat | cytosol, nucleus, peroxisome | 44.97 | 36.57 |
| TraesCS6A01G083100.1 | Wheat | cytosol, nucleus, peroxisome | 44.97 | 36.11 |
| TraesCS6D01G076900.1 | Wheat | nucleus | 44.97 | 36.11 |
| Solyc08g080960.2.1 | Tomato | nucleus | 35.85 | 34.13 |
| Solyc08g008030.2.1 | Tomato | nucleus | 36.16 | 33.24 |
| Os02t0125200-00 | Rice | mitochondrion | 38.05 | 32.97 |
| Solyc12g094710.1.1 | Tomato | nucleus | 36.48 | 32.49 |
| Solyc02g038760.2.1 | Tomato | nucleus | 33.02 | 32.21 |
| Solyc02g082300.2.1 | Tomato | nucleus, plastid | 23.9 | 29.12 |
| Solyc11g006190.1.1 | Tomato | nucleus | 29.87 | 28.19 |
| Solyc09g008940.2.1 | Tomato | nucleus | 34.91 | 26.62 |
| Solyc12g019430.1.1 | Tomato | cytosol, plastid, vacuole | 16.04 | 26.56 |
| Solyc08g077030.2.1 | Tomato | nucleus | 32.7 | 25.43 |
| Solyc08g006950.2.1 | Tomato | nucleus | 30.19 | 24.55 |
Protein Annotations
| EnsemblPlants:Solyc01g091370.2.1 | EnsemblPlantsGene:Solyc01g091370.2 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF15 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI00027681E1 |
| UniProt:K4AZ77 | MapMan:35.1 | : | : | : | : |
Description
AT-hook motif nuclear-localized protein 7 [Source:Projected from Arabidopsis thaliana (AT4G00200) UniProtKB/Swiss-Prot;Acc:Q4V3E0]
Coordinates
chr1:-:85002570..85006971
Molecular Weight (calculated)
33482.8 Da
IEP (calculated)
10.082
GRAVY (calculated)
-0.266
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MESREAIAPE APSNYHMVSR TESTPIPPGT LAVIPPPVAT AFPISSEKKK RGRPRKYGPD GAVARTISPT PISADFLSKK VSVARPESEK KARNKVGAEN
101: LGEWISCSTG GNFLPHMITV EAGEDVTMKI ISFSQQGPRA ICIISAVGLI SNVTLRQPNS SGGTLTYEGR FEILSLSGSF TPTEFGGSRT TSRTGGMSIS
201: LASPDGRVVG GTLAGLLIAA SPVQVVVGSF LPSNYQEVKP KKQKAELKAI TYGTLSPAAP HSSNMEPRSS NAHTVNVPAA GTQNVISSSI QPNHWTAMPS
301: VQDSRKSTTD INISLQGE
101: LGEWISCSTG GNFLPHMITV EAGEDVTMKI ISFSQQGPRA ICIISAVGLI SNVTLRQPNS SGGTLTYEGR FEILSLSGSF TPTEFGGSRT TSRTGGMSIS
201: LASPDGRVVG GTLAGLLIAA SPVQVVVGSF LPSNYQEVKP KKQKAELKAI TYGTLSPAAP HSSNMEPRSS NAHTVNVPAA GTQNVISSSI QPNHWTAMPS
301: VQDSRKSTTD INISLQGE
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.