Factsheet for Solyc08g008030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094460.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	Solyc01g094460.2.1	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014926	Potato	plastid	95.66	95.94
Solyc08g080960.2.1	Tomato	nucleus	72.54	75.15
KRH05193	Soybean	plastid	26.01	61.22
VIT_02s0025g03580.t01	Wine grape	nucleus	57.51	57.51
KRH27929	Soybean	nucleus	53.47	52.56
KRH77536	Soybean	nucleus	53.18	51.54
KRH59866	Soybean	nucleus	52.31	51.42
KRH41165	Soybean	nucleus	52.02	51.14
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	45.95	47.75
GSMUA_Achr8P11400_001	Banana	nucleus	45.66	45.66
Bra025511.1-P	Field mustard	nucleus	36.42	45.49
Solyc01g094460.2.1	Tomato	nucleus	43.35	44.25
CDY64088	Canola	nucleus, plasma membrane, plastid	46.24	44.2
CDY45364	Canola	nucleus	46.24	43.6
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	24.28	42.86
Bra027801.1-P	Field mustard	nucleus	46.24	42.67
CDY25500	Canola	nucleus	45.38	42.43
AT1G63470.1	Thale cress	nucleus	45.95	42.06
GSMUA_Achr11P...	Banana	nucleus	45.09	42.05
GSMUA_Achr11P...	Banana	nucleus	44.8	41.33
AT1G63480.1	Thale cress	nucleus	43.06	41.27
Bra027642.1-P	Field mustard	nucleus	45.38	41.21
CDY39751	Canola	nucleus	44.8	40.58
HORVU2Hr1G123730.3	Barley	plastid	24.57	40.48
CDY46385	Canola	nucleus	44.51	40.31
CDY34355	Canola	nucleus	43.93	40.21
GSMUA_Achr4P30000_001	Banana	nucleus	37.28	39.57
Os02t0824300-01	Rice	nucleus	42.49	37.31
Zm00001d018515_P002	Maize	nucleus	41.62	37.11
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	42.49	36.75
OQU85994	Sorghum	nucleus	42.49	36.66
Solyc01g091370.2.1	Tomato	nucleus	33.24	36.16
Solyc08g007530.2.1	Tomato	nucleus	34.1	35.98
TraesCS7A01G565900.1	Wheat	nucleus	31.79	35.83
Solyc08g079630.2.1	Tomato	nucleus	33.24	35.83
Solyc03g007150.2.1	Tomato	nucleus	33.53	35.69
Solyc04g053090.1.1	Tomato	plastid	17.34	35.5
Solyc04g053100.1.1	Tomato	plastid	16.18	33.73
Solyc12g094710.1.1	Tomato	nucleus	33.81	32.77
Solyc02g038760.2.1	Tomato	nucleus	30.64	32.52
TraesCS2A01G582300.1	Wheat	nucleus	36.42	31.19
Solyc11g006190.1.1	Tomato	nucleus	29.77	30.56
TraesCS2B01G604700.1	Wheat	nucleus	35.55	30.52
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	35.55	30.37
Solyc02g082300.2.1	Tomato	nucleus, plastid	22.83	30.27
TraesCS6B01G447600.1	Wheat	nucleus	40.75	29.94
Solyc06g035430.2.1	Tomato	nucleus	29.48	29.48
Os04t0683900-01	Rice	nucleus	35.26	29.12
KXG27470	Sorghum	nucleus	34.39	28.47
Zm00001d026652_P001	Maize	plastid	32.66	28.46
TraesCS6A01G403700.1	Wheat	nucleus	42.2	27.5
Zm00001d001784_P002	Maize	nucleus	32.95	26.21
HORVU7Hr1G122340.3	Barley	nucleus	26.01	25.79
Solyc08g077030.2.1	Tomato	nucleus	30.35	25.67
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	14.16	25.52
Solyc09g008940.2.1	Tomato	nucleus	30.35	25.18
Solyc08g006950.2.1	Tomato	nucleus	28.03	24.81

Protein Annotations

EnsemblPlants:Solyc08g008030.2.1	EnsemblPlantsGene:Solyc08g008030.2	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF9	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000276CA5C
UniProt:K4CIT8	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr8:-:2522295..2528486

Molecular Weight (calculated)

35388.8 Da

IEP (calculated)

10.211

GRAVY (calculated)

-0.312

Length

346 amino acids

Sequence
(BLAST)

001: MDGREGMVLS GGAAYYLNRG ISGSGSGVGG GSGAPTRVTT PPSYKSLSNP NISVQSNVGG GGTLSSTYQA VENPSPHFSH GINMSVVSSV SSGSDPVKKK
101: RGRPRKYGPD GSKMSLGLSP LSSTPSTGSI TPGPKRAKGR PPGSGWKQKL APLGEWMNTS AGLAFTPHVI NISVGEDVAA KLLAFAEQRP RALCVLSASG
201: SLSAVTLRPP TSSGSTVTYE GRFEILCLSG SYLVAESGGP RDRTGGISIS VSSPDGHVLG GAVGGRLIAT SPVQVVVCSF VYGPKVKSKP ETSTKGSEEE
301: SAEKPSIPIK ATLSQDPTSN PATGVWPPIS RPELRNSQPE IDLTRG

Best Arabidopsis Sequence Match ( AT1G63470.1 )
(BLAST)

001: MDGREAMAFP GSHSQFYLQR GVFTNLTPSQ VASGLHAPPP PPGMRPMSNP NIHHPQASNP GPPFSMAEHR HSDFGHSIHM GMASPAAVQP TLQLPPPPSE
101: QPMVKKKRGR PRKYVPDGQV SLGLSPMPCV SKKSKDSSSM SDPNAPKRAR GRPPGTGRKQ RLANLGEWMN TSAGLAFAPH VISVGSGEDI VSKVLSFSQK
201: RPRALCIMSG TGTVSSVTLR EPASTTPSLT FEGRFEILSL GGSYLVNEEG GSKSRTGGLS VSLSGPEGHV IGGGIGMLIA ASLVQVVACS FVYGASAKSN
301: NNNNKTIKQE IKPKQEPTNS EMETTPGSAP EAAASTGQHT PQNFPAQGMS GWPVSGSGSG RSLDSSRNPL TDIDLTRG

Arabidopsis Description

AHL5AT-hook motif nuclear-localized protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXB3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.