CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87860
EES01452
EES19838
EES19937
KXG27470
KXG29351
KXG33101
KXG38867
OQU78328
OQU82226
OQU85994
OQU87589

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	KXG27470	AT3G61310.1	21798944
AT1G63480.1	OQU85994	AT3G61310.1	21798944
AT1G63480.1	EER87860	AT5G56600.1	21798944
AT1G63480.1	EES01452	AT5G56600.1	21798944
AT1G63480.1	EES19838	AT5G56600.1	21798944
AT1G63480.1	OQU78328	AT5G56600.1	21798944
AT2G45850.1	KXG29351	AT4G12080.1	21798944
AT2G45850.1	KXG38867	AT4G17950.1	21798944
AT2G45850.1	OQU82226	AT4G17950.1	21798944
AT3G61310.1	EES19937	AT1G52240.1	21798944
AT3G61310.1	KXG33101	AT1G52240.1	21798944
AT3G61310.1	OQU87589	AT1G52240.1	21798944
AT3G61310.1	KXG27470	AT2G45850.1	21798944
AT3G61310.1	OQU85994	AT2G45850.1	21798944
AT3G61310.1	KXG27470	AT3G61310.1	21798944
AT3G61310.1	OQU85994	AT3G61310.1	21798944
AT3G61310.1	KXG29351	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018515_P002	Maize	nucleus	88.53	91.49
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	85.79	86.0
Os02t0824300-01	Rice	nucleus	82.79	84.26
TraesCS7A01G565900.1	Wheat	nucleus	47.38	61.89
TraesCS6B01G447600.1	Wheat	nucleus	71.32	60.72
TraesCS6A01G403700.1	Wheat	nucleus	78.05	58.95
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	41.65	48.41
KRH40471	Soybean	nucleus	39.65	46.63
KRH00715	Soybean	nucleus	39.65	46.49
KRH48165	Soybean	nucleus	39.15	46.18
VIT_02s0025g03580.t01	Wine grape	nucleus	39.65	45.95
KRH65066	Soybean	nucleus	38.9	45.88
KRH05193	Soybean	plastid	16.71	45.58
Solyc01g094460.2.1	Tomato	nucleus	37.41	44.25
PGSC0003DMT400000467	Potato	nucleus	36.91	43.66
Solyc08g080960.2.1	Tomato	nucleus	36.16	43.41
HORVU7Hr1G122340.3	Barley	nucleus	37.41	42.98
PGSC0003DMT400014926	Potato	plastid	36.91	42.9
Solyc08g008030.2.1	Tomato	nucleus	36.66	42.49
Bra014444.1-P	Field mustard	nucleus	35.16	42.34
KRH27929	Soybean	nucleus	36.91	42.05
CDY51561	Canola	nucleus	35.41	41.76
CDY42495	Canola	nucleus	35.16	41.72
CDX89109	Canola	nucleus	34.66	41.49
KRH77536	Soybean	nucleus	36.66	41.18
CDY58791	Canola	nucleus	33.67	41.16
AT2G45850.1	Thale cress	nucleus	35.16	40.52
CDY37070	Canola	nucleus	34.41	40.47
Bra039309.1-P	Field mustard	nucleus	34.41	40.47
CDY27354	Canola	nucleus	34.66	39.83
KRH59866	Soybean	nucleus	34.41	39.2
Bra007595.1-P	Field mustard	nucleus	33.17	39.0
KRH41165	Soybean	nucleus	34.16	38.92
OQU82226	Sorghum	plastid	33.67	38.9
CDX71746	Canola	nucleus	33.17	38.66
CDY48928	Canola	nucleus	33.17	38.66
AT3G61310.1	Thale cress	nucleus, plastid	33.92	38.42
CDY64088	Canola	nucleus, plasma membrane, plastid	34.41	38.12
Bra003446.1-P	Field mustard	nucleus	32.17	38.05
Bra025511.1-P	Field mustard	nucleus	25.94	37.55
CDY45364	Canola	nucleus	34.16	37.33
CDY25500	Canola	nucleus	34.41	37.3
PGSC0003DMT400031843	Potato	plastid	35.41	36.98
AT1G63470.1	Thale cress	nucleus	34.66	36.77
Bra027642.1-P	Field mustard	nucleus	34.91	36.75
Bra027801.1-P	Field mustard	nucleus	34.16	36.53
CDY34355	Canola	nucleus	33.92	35.98
KXG25625	Sorghum	nucleus	32.92	35.39
OQU89696	Sorghum	nucleus	33.17	34.91
AT1G63480.1	Thale cress	nucleus	30.67	34.07
CDY39751	Canola	nucleus	31.92	33.51
CDY46385	Canola	nucleus	31.17	32.72
KXG27470	Sorghum	nucleus	33.17	31.82
EES07975	Sorghum	cytosol	28.68	31.77
OQU76344	Sorghum	nucleus	28.43	31.49
KXG38867	Sorghum	plastid	32.92	31.21
EES15662	Sorghum	cytosol, nucleus, peroxisome	27.18	30.62
KXG24283	Sorghum	plastid	28.68	29.26
KXG29351	Sorghum	plastid	27.18	29.07

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:8060400	UniProt:A0A1Z5RQI6	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	EnsemblPlants:OQU85994	ProteinID:OQU85994
ProteinID:OQU85994.1	PFAM:PF03479	InterPro:PPC_dom	PRINTS:PR00929	PFscan:PS51742	PANTHER:PTHR31500
PANTHER:PTHR31500:SF41	SMART:SM00384	EnsemblPlantsGene:SORBI_3004G352100	SUPFAM:SSF117856	UniParc:UPI0001A86150	RefSeq:XP_002454810.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:68085623..68090287

Molecular Weight (calculated)

40440.4 Da

IEP (calculated)

7.270

GRAVY (calculated)

-0.320

Length

401 amino acids

Sequence
(BLAST)

001: MDGRESTVTS GPNFSSFYAQ HRGIGAPGVP GHSSGLHGPP PGGYRQHLDA VSAGYAFQTP HVGGPHIGQG YHHVEASHHV AQHSAGGGSS SGGGGMDIGM
101: GVAVSADVKG DQGSGPGQDE QVKKKRGRPR KYKPDGAVTL GLSPSSSSTP HSSSPGMGTM VCTPGSGFGS GASGGSGSGA PSEKRGRGRP PGSGKMQQLA
201: SLGKWFLGSV GTGFTPHVII IQPGEDVAAR IMAFSQQGPR AVCIISATGA VSTATLHQDS DSGGVVTYEG RFEILCLSGS YLVLDDGGTR TRSGGLCIAL
301: CGPDHRVIGG SVGGVLTAAG TVQVIVGSFM YGGSKKNKAK AEADIEPEEA NAGDEEVAPA MALADHSSMA PPPEMSGGWA SGMMRQIDSR TPNIDINSIR
401: E

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.