Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G63470.1 | Thale cress | nucleus | 80.06 | 76.45 |
| Bra025511.1-P | Field mustard | nucleus | 47.09 | 61.37 |
| CDY39751 | Canola | nucleus | 59.56 | 56.28 |
| KRH05193 | Soybean | plastid | 22.71 | 55.78 |
| CDY46385 | Canola | nucleus | 59.0 | 55.76 |
| VIT_02s0025g03580.t01 | Wine grape | nucleus | 50.14 | 52.31 |
| KRH27929 | Soybean | nucleus | 48.2 | 49.43 |
| KRH77536 | Soybean | nucleus | 47.37 | 47.9 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 43.21 | 46.85 |
| KRH59866 | Soybean | nucleus | 45.43 | 46.59 |
| KRH41165 | Soybean | nucleus | 44.6 | 45.74 |
| Solyc08g080960.2.1 | Tomato | nucleus | 40.17 | 43.41 |
| PGSC0003DMT400014926 | Potato | plastid | 41.27 | 43.19 |
| Solyc08g008030.2.1 | Tomato | nucleus | 41.27 | 43.06 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 40.44 | 42.2 |
| GSMUA_Achr11P... | Banana | nucleus | 42.94 | 41.78 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 22.16 | 40.82 |
| GSMUA_Achr11P... | Banana | nucleus | 42.11 | 40.53 |
| PGSC0003DMT400031843 | Potato | plastid | 41.0 | 38.54 |
| AT2G45850.1 | Thale cress | nucleus | 36.57 | 37.93 |
| AT3G61310.1 | Thale cress | nucleus, plastid | 36.84 | 37.57 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 31.58 | 34.97 |
| Os02t0824300-01 | Rice | nucleus | 36.01 | 32.99 |
| Zm00001d018515_P002 | Maize | nucleus | 34.63 | 32.22 |
| HORVU2Hr1G123730.3 | Barley | plastid | 18.56 | 31.9 |
| TraesCS7A01G565900.1 | Wheat | nucleus | 26.32 | 30.94 |
| OQU85994 | Sorghum | nucleus | 34.07 | 30.67 |
| Zm00001d051861_P001 | Maize | endoplasmic reticulum, nucleus, plastid | 33.24 | 30.0 |
| AT4G00200.2 | Thale cress | nucleus | 26.04 | 29.56 |
| AT4G12080.1 | Thale cress | nucleus | 28.25 | 28.65 |
| AT4G22770.1 | Thale cress | nucleus | 26.32 | 28.44 |
| AT2G33620.2 | Thale cress | nucleus | 27.42 | 28.21 |
| Os04t0683900-01 | Rice | nucleus | 31.58 | 27.21 |
| TraesCS2B01G604700.1 | Wheat | nucleus | 30.19 | 27.05 |
| TraesCS2D01G597900.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 30.19 | 26.91 |
| TraesCS6B01G447600.1 | Wheat | nucleus | 34.63 | 26.54 |
| TraesCS2A01G582300.1 | Wheat | nucleus | 29.64 | 26.49 |
| Zm00001d026652_P001 | Maize | plastid | 29.09 | 26.45 |
| AT5G28590.1 | Thale cress | mitochondrion | 15.79 | 26.39 |
| AT5G46640.1 | Thale cress | nucleus | 27.15 | 25.39 |
| TraesCS6A01G403700.1 | Wheat | nucleus | 36.84 | 25.05 |
| KXG27470 | Sorghum | nucleus | 28.81 | 24.88 |
| AT4G17950.1 | Thale cress | nucleus | 29.64 | 24.37 |
| Zm00001d001784_P002 | Maize | nucleus | 27.42 | 22.76 |
| AT3G04590.2 | Thale cress | nucleus | 25.76 | 22.63 |
| AT5G51590.1 | Thale cress | nucleus | 25.48 | 21.96 |
| HORVU7Hr1G122340.3 | Barley | nucleus | 21.05 | 21.78 |
| AT5G62260.3 | Thale cress | nucleus | 23.55 | 21.04 |
| AT4G25320.1 | Thale cress | nucleus | 23.27 | 20.79 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:842654 | ProteinID:AAF19697.1 | ProteinID:AEE34104.1 | ProteinID:ANM60201.1 |
| ArrayExpress:AT1G63480 | EnsemblPlantsGene:AT1G63480 | RefSeq:AT1G63480 | TAIR:AT1G63480 | RefSeq:AT1G63480-TAIR-G | EnsemblPlants:AT1G63480.1 |
| TAIR:AT1G63480.1 | InterPro:AT_hook_DNA-bd_motif | EMBL:AY070384 | EMBL:AY096576 | Unigene:At.28375 | EMBL:BR000348 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043621 | InterPro:IPR005175 |
| RefSeq:NP_001322498.1 | RefSeq:NP_001322499.1 | RefSeq:NP_001322500.1 | RefSeq:NP_001322501.1 | RefSeq:NP_001322502.1 | RefSeq:NP_001322503.1 |
| RefSeq:NP_176537.2 | PFAM:PF03479 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | InterPro:PPC_dom |
| PRINTS:PR00929 | PFscan:PS51742 | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF9 | UniProt:Q8LPN5 | SUPFAM:SSF117856 |
| UniParc:UPI00000A0B46 | SEG:seg | : | : | : | : |
Description
AHL12AT-hook motif nuclear-localized protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPN5]
Coordinates
chr1:-:23539557..23542233
Molecular Weight (calculated)
38313.9 Da
IEP (calculated)
8.904
GRAVY (calculated)
-0.633
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGREAMAFP GSHSQYYLQR GAFTNLAPSQ VASGLHAPPP HTGLRPMSNP NIHHPQANNP GPPFSDFGHT IHMGVVSSAS DADVQPPPPP PPPEEPMVKR
101: KRGRPRKYGE PMVSNKSRDS SPMSDPNEPK RARGRPPGTG RKQRLANLGE WMNTSAGLAF APHVISIGAG EDIAAKVLSF SQQRPRALCI MSGTGTISSV
201: TLCKPGSTDR HLTYEGPFEI ISFGGSYLVN EEGGSRSRTG GLSVSLSRPD GSIIAGGVDM LIAANLVQVV ACSFVYGARA KTHNNNNKTI RQEKEPNEED
301: NNSEMETTPG SAAEPAASAG QQTPQNFSSQ GIRGWPGSGS GSGRSLDICR NPLTDFDLTR G
101: KRGRPRKYGE PMVSNKSRDS SPMSDPNEPK RARGRPPGTG RKQRLANLGE WMNTSAGLAF APHVISIGAG EDIAAKVLSF SQQRPRALCI MSGTGTISSV
201: TLCKPGSTDR HLTYEGPFEI ISFGGSYLVN EEGGSRSRTG GLSVSLSRPD GSIIAGGVDM LIAANLVQVV ACSFVYGARA KTHNNNNKTI RQEKEPNEED
301: NNSEMETTPG SAAEPAASAG QQTPQNFSSQ GIRGWPGSGS GSGRSLDICR NPLTDFDLTR G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.