Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16785 | Canola | nucleus | 76.98 | 79.34 |
| Bra035899.1-P | Field mustard | nucleus | 76.98 | 79.34 |
| CDX87241 | Canola | nucleus | 76.73 | 79.28 |
| CDX86910 | Canola | nucleus | 78.22 | 79.2 |
| CDY00271 | Canola | nucleus | 78.96 | 79.16 |
| Bra010070.1-P | Field mustard | nucleus | 78.96 | 79.16 |
| CDY30710 | Canola | nucleus | 74.26 | 74.81 |
| Bra029271.1-P | Field mustard | cytosol, nucleus, peroxisome | 72.77 | 73.32 |
| KRH34345 | Soybean | nucleus | 35.64 | 43.64 |
| KRG92455 | Soybean | nucleus | 34.9 | 42.73 |
| Solyc03g007150.2.1 | Tomato | nucleus | 33.91 | 42.15 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 36.14 | 41.6 |
| KRH09229 | Soybean | nucleus | 35.4 | 41.57 |
| AT5G51590.1 | Thale cress | nucleus | 43.07 | 41.53 |
| KRH38723 | Soybean | nucleus | 35.15 | 41.28 |
| AT4G25320.1 | Thale cress | nucleus | 40.59 | 40.59 |
| AT4G00200.2 | Thale cress | nucleus | 31.44 | 39.94 |
| PGSC0003DMT400071865 | Potato | plastid | 30.2 | 39.61 |
| PGSC0003DMT400079651 | Potato | nucleus | 33.66 | 39.31 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 31.93 | 38.39 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 34.65 | 36.75 |
| Solyc06g035430.2.1 | Tomato | nucleus | 31.44 | 36.71 |
| Os08t0118000-01 | Rice | nucleus | 33.66 | 36.56 |
| AT4G12080.1 | Thale cress | nucleus | 31.19 | 35.39 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 33.42 | 35.34 |
| KXG24283 | Sorghum | plastid | 34.16 | 35.11 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 33.42 | 34.53 |
| HORVU7Hr1G075040.1 | Barley | plastid | 33.42 | 34.35 |
| TraesCS7B01G215600.1 | Wheat | plastid | 33.17 | 34.01 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 32.67 | 33.85 |
| AT4G22770.1 | Thale cress | nucleus | 27.97 | 33.83 |
| TraesCS7D01G312100.1 | Wheat | plastid | 32.67 | 33.25 |
| TraesCS7A01G315100.1 | Wheat | plastid | 32.67 | 33.17 |
| AT2G33620.2 | Thale cress | nucleus | 25.74 | 29.63 |
| AT5G46640.1 | Thale cress | nucleus | 26.73 | 27.98 |
| AT2G45850.1 | Thale cress | nucleus | 23.51 | 27.3 |
| AT3G61310.1 | Thale cress | nucleus, plastid | 23.51 | 26.84 |
| AT1G63470.1 | Thale cress | nucleus | 23.76 | 25.4 |
| AT4G17950.1 | Thale cress | nucleus | 26.24 | 24.15 |
| AT5G28590.1 | Thale cress | mitochondrion | 12.87 | 24.07 |
| AT1G63480.1 | Thale cress | nucleus | 21.04 | 23.55 |
| AT3G04590.2 | Thale cress | nucleus | 22.03 | 21.65 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:836347 | UniProt:A0A178UMD3 | ProteinID:AED97587.1 | EMBL:AK118328 |
| ProteinID:ANM70608.1 | ArrayExpress:AT5G62260 | EnsemblPlantsGene:AT5G62260 | RefSeq:AT5G62260 | TAIR:AT5G62260 | RefSeq:AT5G62260-TAIR-G |
| EnsemblPlants:AT5G62260.3 | ProteinID:BAA97190.1 | EMBL:BR000342 | EMBL:BT005681 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR005175 | RefSeq:NP_001332202.1 | RefSeq:NP_201032.2 | ProteinID:OAO94815.1 | PFAM:PF03479 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31500 | PANTHER:PTHR31500:SF18 | UniProt:Q9LVB0 | SUPFAM:SSF117856 |
| UniParc:UPI000000C6F8 | SEG:seg | : | : | : | : |
Description
AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
Coordinates
chr5:+:25008843..25011666
Molecular Weight (calculated)
42806.2 Da
IEP (calculated)
6.963
GRAVY (calculated)
-0.596
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.