Factsheet for Bra035899.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16785	Canola	nucleus	100.0	100.0
Bra010070.1-P	Field mustard	nucleus	85.97	83.62
AT5G62260.3	Thale cress	nucleus	79.34	76.98
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	78.06	76.31
KRH34345	Soybean	nucleus	36.99	43.94
KRG92455	Soybean	nucleus	35.97	42.73
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	37.76	42.17
KRH09229	Soybean	nucleus	36.99	42.15
Solyc03g007150.2.1	Tomato	nucleus	34.44	41.54
Bra029164.1-P	Field mustard	nucleus	44.64	41.27
KRH38723	Soybean	nucleus	35.97	40.99
Bra013886.1-P	Field mustard	nucleus	39.29	40.42
Bra019174.1-P	Field mustard	nucleus	40.56	40.15
PGSC0003DMT400071865	Potato	plastid	31.12	39.61
Bra037321.1-P	Field mustard	nucleus	31.89	39.56
Bra028265.1-P	Field mustard	nucleus	42.6	38.93
PGSC0003DMT400079651	Potato	nucleus	33.93	38.44
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	32.91	38.39
GSMUA_Achr1P19840_001	Banana	nucleus	36.48	37.53
Bra022946.1-P	Field mustard	nucleus	25.0	37.4
Os08t0118000-01	Rice	nucleus	35.2	37.1
Solyc06g035430.2.1	Tomato	nucleus	32.65	36.99
Bra022555.1-P	Field mustard	nucleus	39.54	36.99
Bra033121.1-P	Field mustard	nucleus	28.83	36.45
Bra013646.1-P	Field mustard	nucleus	28.32	36.39
Bra019359.1-P	Field mustard	nucleus	29.85	35.56
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	34.44	35.34
KXG24283	Sorghum	plastid	35.2	35.11
TraesCS7B01G215600.1	Wheat	plastid	34.44	34.26
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	33.93	34.1
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	33.93	34.02
HORVU7Hr1G075040.1	Barley	plastid	33.67	33.59
TraesCS7D01G312100.1	Wheat	plastid	33.67	33.25
TraesCS7A01G315100.1	Wheat	plastid	33.67	33.17
Bra025511.1-P	Field mustard	nucleus	21.68	30.69
Bra021865.1-P	Field mustard	nucleus	26.53	29.71
Bra007595.1-P	Field mustard	nucleus	25.0	28.74
Bra025716.1-P	Field mustard	nucleus	19.64	28.62
Bra014444.1-P	Field mustard	nucleus	24.23	28.53
Bra027642.1-P	Field mustard	nucleus	27.3	28.08
Bra027801.1-P	Field mustard	nucleus	26.28	27.47
Bra039309.1-P	Field mustard	nucleus	23.72	27.27
Bra003446.1-P	Field mustard	nucleus	23.21	26.84
Bra017536.1-P	Field mustard	nucleus	23.72	26.35
Bra025717.1-P	Field mustard	nucleus	19.9	25.74
Bra021027.1-P	Field mustard	nucleus	26.28	25.12
Bra025718.1-P	Field mustard	nucleus, plastid	18.88	24.34
Bra020612.1-P	Field mustard	nucleus	21.68	24.15
Bra040133.1-P	Field mustard	nucleus	23.47	24.02
Bra009999.1-P	Field mustard	nucleus	22.45	23.66
Bra013270.1-P	Field mustard	nucleus	24.74	22.77

Protein Annotations

EnsemblPlants:Bra035899.1	EnsemblPlants:Bra035899.1-P	EnsemblPlantsGene:Bra035899	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI0002542094	UniProt:M4F499	MapMan:35.1	:	:	:

Description

AT5G62260 (E=1e-112) | DNA binding

Coordinates

chrA09:+:3006503..3008422

Molecular Weight (calculated)

41455.8 Da

IEP (calculated)

8.815

GRAVY (calculated)

-0.558

Length

392 amino acids

Sequence
(BLAST)

001: MEEKGGMSPS GVITVKGDET LAPRTEFQQN PSFLPSVRPT TVVPPLPPAP ATVTPGSAAA APPPSISSAG TDLTKKKRGR PRKYAPDGSL NPRASRPTLS
101: PTPISSSIPF SGDYHHHSHW KRGKAHQQPV EFIKRSNKFE YESSPAPPPA GLSCYMGANF TTHQFTVNAG EDVTMKVMPY SQGSRAICIL SATGTISNVT
201: LRQPTTSGGT LTYEGRFEIL SLSGSFMPTE NCGTKGRSGG MSISLAGPNG KIIGGGLAGM LIAAGPVQVI MGSFIVMHQA EQTHKKKPRI MEACPPPPQP
301: QQQPPTFTIT TVNSTSPAVA TVEEPKQQTY GGGGTMRPLS QMPSSFHNDS ITTTYHGYGN MNTGATNYKE EDDYENGGDD DSGDTRSLSN SG

Best Arabidopsis Sequence Match ( AT5G62260.3 )
(BLAST)

001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG

Arabidopsis Description

AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.