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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra013886.1-P
Bra019174.1-P
Bra022555.1-P nucleus
Bra028265.1-P nucleus
Bra029164.1-P nucleus
Bra033121.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25320.1 Bra033121.1-P AT4G12080.1 21798944
AT4G25320.1 Bra013886.1-P AT4G25320.1 23335615
AT4G25320.1 Bra019174.1-P AT4G25320.1 23335615
AT4G25320.1 Bra022555.1-P AT5G51590.1 23335615
AT4G25320.1 Bra028265.1-P AT5G51590.1 23335615
AT4G25320.1 Bra029164.1-P AT5G51590.1 23335615
AT4G25320.1 Bra022555.1-P AT5G51590.1 23335615
AT4G25320.1 Bra028265.1-P AT5G51590.1 23335615
AT4G25320.1 Bra029164.1-P AT5G51590.1 23335615
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY49703 Canola nucleus 100.0 99.25
CDX92693 Canola nucleus 97.22 97.22
Bra013886.1-P Field mustard nucleus 82.07 85.3
AT4G25320.1 Thale cress nucleus 84.85 83.17
Bra029164.1-P Field mustard nucleus 65.91 61.56
Bra028265.1-P Field mustard nucleus 66.16 61.07
Bra022555.1-P Field mustard nucleus 60.86 57.52
PGSC0003DMT400071865 Potato plastid 35.86 46.1
KRH34345 Soybean nucleus 38.13 45.76
VIT_16s0022g01810.t01 Wine grape cytosol, nucleus, peroxisome 40.4 45.58
KRG92455 Soybean nucleus 37.88 45.45
Solyc03g007150.2.1 Tomato nucleus 37.12 45.23
Solyc06g035430.2.1 Tomato nucleus 37.12 42.49
KRH09229 Soybean nucleus 36.62 42.15
KRH38723 Soybean nucleus 36.36 41.86
PGSC0003DMT400079651 Potato nucleus 36.36 41.62
GSMUA_Achr7P06500_001 Banana cytosol, plasma membrane, plastid 35.1 41.37
Bra022946.1-P Field mustard nucleus 27.02 40.84
Bra035899.1-P Field mustard nucleus 40.15 40.56
Bra019359.1-P Field mustard nucleus 33.59 40.43
Bra010070.1-P Field mustard nucleus 40.91 40.2
Bra013646.1-P Field mustard nucleus 30.81 40.0
Bra037321.1-P Field mustard nucleus 31.57 39.56
Bra029271.1-P Field mustard cytosol, nucleus, peroxisome 39.39 38.9
GSMUA_Achr1P19840_001 Banana nucleus 37.12 38.58
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 37.12 38.48
Bra033121.1-P Field mustard nucleus 29.8 38.06
Os08t0118000-01 Rice nucleus 34.34 36.56
GSMUA_Achr2P03170_001 Banana cytosol, peroxisome, plasma membrane 35.35 35.9
KXG24283 Sorghum plastid 33.33 33.59
TraesCS7B01G215600.1 Wheat plastid 33.33 33.5
Zm00001d049661_P001 Maize cytosol, peroxisome, plasma membrane 32.83 33.25
HORVU7Hr1G075040.1 Barley plastid 32.83 33.08
TraesCS7D01G312100.1 Wheat plastid 33.08 33.0
TraesCS7A01G315100.1 Wheat plastid 33.08 32.91
Bra021865.1-P Field mustard nucleus 28.03 31.71
Bra039309.1-P Field mustard nucleus 26.01 30.21
Bra007595.1-P Field mustard nucleus 25.76 29.91
Bra014444.1-P Field mustard nucleus 25.0 29.73
Bra025511.1-P Field mustard nucleus 20.45 29.24
Bra027642.1-P Field mustard nucleus 27.27 28.35
Bra003446.1-P Field mustard nucleus 23.99 28.02
Bra027801.1-P Field mustard nucleus 26.26 27.73
Bra020612.1-P Field mustard nucleus 24.49 27.56
Bra025716.1-P Field mustard nucleus 18.18 26.77
Bra009999.1-P Field mustard nucleus 25.0 26.61
Bra025717.1-P Field mustard nucleus 20.2 26.4
Bra040133.1-P Field mustard nucleus 24.24 25.07
Bra021027.1-P Field mustard nucleus 25.51 24.63
Bra025718.1-P Field mustard nucleus, plastid 18.69 24.34
Bra017536.1-P Field mustard nucleus 21.46 24.08
Bra013270.1-P Field mustard nucleus 25.25 23.47
Protein Annotations
EnsemblPlants:Bra019174.1EnsemblPlants:Bra019174.1-PEnsemblPlantsGene:Bra019174Gene3D:3.30.1330.80InterPro:IPR005175InterPro:PPC_dom
PANTHER:PTHR31500PANTHER:PTHR31500:SF18PFAM:PF03479PFscan:PS51742SEG:segSUPFAM:SSF117856
UniParc:UPI00025410CBUniProt:M4DRN1MapMan:35.1:::
Description
AT4G25320 (E=6e-123) | DNA-binding protein-related
Coordinates
chrA03:+:25865465..25867125
Molecular Weight (calculated)
42153.7 Da
IEP (calculated)
5.136
GRAVY (calculated)
-0.585
Length
396 amino acids
Sequence
(BLAST)
001: MEEREGTNNV TSFGLNQQQQ HEAAASSYPM DPPRPDNPNP FSAPPITSSS SAAAAVENAA PQFSLTMPAA ETGSSEQKKK RGRPRKYNPD GTLAVTLSPM
101: PISSSVPLSS EFPPRKRGRG RGRSSRWLKK SQMFQFDRSP VVTNLTGAGV AAAADFAGAN FTPYVLTVNA GEDVTMKIMT FSQQGSRAIC ILSANGPISN
201: VTLRQSTTSG GTLTYEGRFE ILSLTGSFMQ NDSGGTRSRA GGMSVCLAGP DGRVFGGGLA GLFLAAGPVQ VMVGTFIAGQ EQSQLQLAKE RRQRFGSQPS
301: SISFNFTAEE RKARFERLNN SVAIAAPTPS YQHENTANAV HSYYTNSVNH VKEPFSSMPG DGGHEEGEGE EDDNELEGDE DGEFGGDSQS DNEIPS
Best Arabidopsis Sequence Match ( AT4G25320.1 )
(BLAST)
001: MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS
Arabidopsis Description
AHL3AT-hook motif nuclear-localized protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB31]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.