Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019174.1-P | Field mustard | nucleus | 99.25 | 100.0 |
| CDX92693 | Canola | nucleus | 96.99 | 97.73 |
| CDX94457 | Canola | nucleus | 80.7 | 85.19 |
| CDX89422 | Canola | nucleus | 81.2 | 84.38 |
| AT4G25320.1 | Thale cress | nucleus | 84.21 | 83.17 |
| CDY32624 | Canola | nucleus | 65.66 | 61.79 |
| CDY38874 | Canola | nucleus | 65.41 | 61.7 |
| CDY00488 | Canola | nucleus | 65.41 | 60.84 |
| CDY65097 | Canola | nucleus | 60.15 | 57.28 |
| CDX99902 | Canola | nucleus | 62.91 | 57.18 |
| CDX91598 | Canola | nucleus | 59.65 | 56.8 |
| PGSC0003DMT400071865 | Potato | plastid | 35.59 | 46.1 |
| KRH34345 | Soybean | nucleus | 37.84 | 45.76 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 40.1 | 45.58 |
| KRG92455 | Soybean | nucleus | 37.59 | 45.45 |
| Solyc03g007150.2.1 | Tomato | nucleus | 36.84 | 45.23 |
| Solyc06g035430.2.1 | Tomato | nucleus | 36.84 | 42.49 |
| KRH09229 | Soybean | nucleus | 36.34 | 42.15 |
| CDY07239 | Canola | plasma membrane | 24.31 | 41.99 |
| KRH38723 | Soybean | nucleus | 36.09 | 41.86 |
| PGSC0003DMT400079651 | Potato | nucleus | 36.09 | 41.62 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 34.84 | 41.37 |
| CDX87241 | Canola | nucleus | 40.35 | 41.18 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 26.82 | 40.84 |
| CDX84679 | Canola | nucleus | 26.82 | 40.84 |
| CDY04392 | Canola | nucleus | 27.32 | 40.67 |
| CDY16785 | Canola | nucleus | 39.85 | 40.56 |
| CDX98767 | Canola | nucleus | 33.33 | 40.43 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 33.33 | 40.43 |
| CDY00271 | Canola | nucleus | 40.6 | 40.2 |
| CDY30710 | Canola | nucleus | 39.85 | 39.65 |
| CDY07238 | Canola | nucleus | 31.33 | 39.56 |
| CDX82971 | Canola | plastid | 21.3 | 39.53 |
| CDY47428 | Canola | nucleus | 30.58 | 39.48 |
| CDX86910 | Canola | nucleus | 39.35 | 39.35 |
| CDY41291 | Canola | nucleus | 30.08 | 39.34 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 36.84 | 38.58 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 36.84 | 38.48 |
| Os08t0118000-01 | Rice | nucleus | 34.09 | 36.56 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 35.09 | 35.9 |
| KXG24283 | Sorghum | plastid | 33.08 | 33.59 |
| TraesCS7B01G215600.1 | Wheat | plastid | 33.08 | 33.5 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 32.58 | 33.25 |
| HORVU7Hr1G075040.1 | Barley | plastid | 32.58 | 33.08 |
| TraesCS7D01G312100.1 | Wheat | plastid | 32.83 | 33.0 |
| TraesCS7A01G315100.1 | Wheat | plastid | 32.83 | 32.91 |
| CDY58791 | Canola | nucleus | 24.81 | 30.18 |
| CDY37070 | Canola | nucleus | 25.56 | 29.91 |
| CDY42495 | Canola | nucleus | 25.31 | 29.88 |
| CDX89109 | Canola | nucleus | 25.06 | 29.85 |
| CDY37704 | Canola | nucleus | 27.82 | 29.6 |
| CDY27354 | Canola | nucleus | 25.81 | 29.51 |
| CDY51561 | Canola | nucleus | 25.06 | 29.41 |
| CDX71746 | Canola | nucleus | 25.31 | 29.36 |
| CDY25500 | Canola | nucleus | 27.07 | 29.19 |
| CDY48928 | Canola | nucleus | 25.06 | 29.07 |
| CDY41028 | Canola | nucleus, plastid | 17.79 | 28.63 |
| CDY01503 | Canola | cytosol | 18.55 | 28.57 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 25.81 | 28.45 |
| CDY34355 | Canola | nucleus | 26.82 | 28.31 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 28.07 | 28.14 |
| CDY45364 | Canola | nucleus | 25.81 | 28.07 |
| CDY05594 | Canola | nucleus | 24.56 | 27.53 |
| CDY52506 | Canola | nucleus | 24.06 | 27.51 |
| CDY41027 | Canola | cytosol | 18.05 | 27.07 |
| CDY52477 | Canola | nucleus | 24.81 | 26.9 |
| CDY65362 | Canola | nucleus | 24.81 | 26.61 |
| CDY26692 | Canola | nucleus | 20.05 | 26.4 |
| CDY26694 | Canola | cytosol, plastid | 17.29 | 26.34 |
| CDY26693 | Canola | plastid | 17.79 | 26.3 |
| CDY68252 | Canola | nucleus | 19.05 | 25.59 |
| CDY30005 | Canola | nucleus | 24.06 | 25.2 |
| CDY21122 | Canola | nucleus | 24.31 | 25.13 |
| CDY03203 | Canola | nucleus | 22.31 | 24.86 |
| CDX78814 | Canola | nucleus | 25.31 | 24.82 |
| CDY26691 | Canola | cytosol, plastid | 19.3 | 24.76 |
| CDY46385 | Canola | nucleus | 23.56 | 24.61 |
| CDY39751 | Canola | nucleus | 23.56 | 24.61 |
| CDY01506 | Canola | nucleus | 18.55 | 24.58 |
| CDY44500 | Canola | nucleus | 25.56 | 24.29 |
| CDY08882 | Canola | nucleus | 26.32 | 24.14 |
| CDY35172 | Canola | nucleus | 21.3 | 24.08 |
| CDX76549 | Canola | nucleus | 26.32 | 23.86 |
| CDY13231 | Canola | nucleus | 23.81 | 23.17 |
Protein Annotations
| EnsemblPlants:CDY49703 | EnsemblPlantsGene:GSBRNA2T00093601001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF18 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY49703 | ProteinID:CDY49703.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EDFC2E | UniProt:A0A078IKU8 | MapMan:35.1 | : | : |
Description
BnaA03g47290DBnaA03g47290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKU8]
Coordinates
chrLK032854:+:2919..6155
Molecular Weight (calculated)
42367.0 Da
IEP (calculated)
5.136
GRAVY (calculated)
-0.567
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEREGTNNV TSFGLNQQQQ HEAAASSAAA YPMDPPRPDN PNPFSAPPIT SSSSAAAAVE NAAPQFSLTM PAAETGSSEQ KKKRGRPRKY NPDGTLAVTL
101: SPMPISSSVP LSSEFPPRKR GRGRGRSSRW LKKSQMFQFD RSPVVTNLTG AGVAAAADFA GANFTPYVLT VNAGEDVTMK IMTFSQQGSR AICILSANGP
201: ISNVTLRQST TSGGTLTYEG RFEILSLTGS FMQNDSGGTR SRAGGMSVCL AGPDGRVFGG GLAGLFLAAG PVQVMVGTFI AGQEQSQLQL AKERRQRFGS
301: QPSSISFNFT AEERKARFER LNNSVAIAAP TPSYQHENTA NAVHSYYTNS VNHVKEPFSS MPGDGGHEEG EGEEDDNELE GDEDGEFGGD SQSDNEIPS
101: SPMPISSSVP LSSEFPPRKR GRGRGRSSRW LKKSQMFQFD RSPVVTNLTG AGVAAAADFA GANFTPYVLT VNAGEDVTMK IMTFSQQGSR AICILSANGP
201: ISNVTLRQST TSGGTLTYEG RFEILSLTGS FMQNDSGGTR SRAGGMSVCL AGPDGRVFGG GLAGLFLAAG PVQVMVGTFI AGQEQSQLQL AKERRQRFGS
301: QPSSISFNFT AEERKARFER LNNSVAIAAP TPSYQHENTA NAVHSYYTNS VNHVKEPFSS MPGDGGHEEG EGEEDDNELE GDEDGEFGGD SQSDNEIPS
001: MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS
Arabidopsis Description
AHL3AT-hook motif nuclear-localized protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.