Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029164.1-P | Field mustard | nucleus | 96.93 | 96.93 |
| CDY38874 | Canola | nucleus | 96.46 | 96.69 |
| CDY00488 | Canola | nucleus | 85.61 | 84.62 |
| AT5G51590.1 | Thale cress | nucleus | 79.72 | 80.67 |
| CDX99902 | Canola | nucleus | 82.78 | 79.95 |
| CDX91598 | Canola | nucleus | 76.65 | 77.57 |
| CDY65097 | Canola | nucleus | 76.42 | 77.33 |
| CDX92693 | Canola | nucleus | 61.79 | 66.16 |
| CDY49703 | Canola | nucleus | 61.79 | 65.66 |
| CDX94457 | Canola | nucleus | 57.08 | 64.02 |
| CDX89422 | Canola | nucleus | 56.37 | 62.24 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 38.44 | 46.44 |
| KRH34345 | Soybean | nucleus | 35.38 | 45.45 |
| KRG92455 | Soybean | nucleus | 35.14 | 45.15 |
| CDY16785 | Canola | nucleus | 41.04 | 44.39 |
| Solyc03g007150.2.1 | Tomato | nucleus | 33.96 | 44.31 |
| CDX87241 | Canola | nucleus | 40.8 | 44.25 |
| CDY00271 | Canola | nucleus | 41.75 | 43.92 |
| PGSC0003DMT400071865 | Potato | plastid | 31.6 | 43.51 |
| CDX86910 | Canola | nucleus | 40.8 | 43.36 |
| CDY07239 | Canola | plasma membrane | 23.58 | 43.29 |
| CDY30710 | Canola | nucleus | 40.57 | 42.89 |
| KRH09229 | Soybean | nucleus | 34.2 | 42.15 |
| CDY07238 | Canola | nucleus | 31.37 | 42.09 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 25.94 | 41.98 |
| CDX84679 | Canola | nucleus | 25.94 | 41.98 |
| KRH38723 | Soybean | nucleus | 33.96 | 41.86 |
| PGSC0003DMT400079651 | Potato | nucleus | 33.25 | 40.75 |
| CDX98767 | Canola | nucleus | 31.13 | 40.12 |
| Solyc06g035430.2.1 | Tomato | nucleus | 32.55 | 39.88 |
| CDY04392 | Canola | nucleus | 25.0 | 39.55 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 30.66 | 39.51 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 30.9 | 38.99 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 34.67 | 38.58 |
| CDY47428 | Canola | nucleus | 27.83 | 38.19 |
| CDY41291 | Canola | nucleus | 27.12 | 37.7 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 33.49 | 37.17 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 32.55 | 35.38 |
| CDX82971 | Canola | plastid | 17.92 | 35.35 |
| Os08t0118000-01 | Rice | nucleus | 30.42 | 34.68 |
| TraesCS7B01G215600.1 | Wheat | plastid | 30.9 | 33.25 |
| HORVU7Hr1G075040.1 | Barley | plastid | 30.66 | 33.08 |
| TraesCS7D01G312100.1 | Wheat | plastid | 30.66 | 32.75 |
| TraesCS7A01G315100.1 | Wheat | plastid | 30.66 | 32.66 |
| KXG24283 | Sorghum | plastid | 30.19 | 32.57 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 29.95 | 32.48 |
| CDY37704 | Canola | nucleus | 27.83 | 31.47 |
| CDY37070 | Canola | nucleus | 25.24 | 31.38 |
| CDY58791 | Canola | nucleus | 24.06 | 31.1 |
| CDY42495 | Canola | nucleus | 24.76 | 31.07 |
| CDX89109 | Canola | nucleus | 24.53 | 31.04 |
| CDX71746 | Canola | nucleus | 24.76 | 30.52 |
| CDY27354 | Canola | nucleus | 25.0 | 30.37 |
| CDY48928 | Canola | nucleus | 24.53 | 30.23 |
| CDY25500 | Canola | nucleus | 26.18 | 30.0 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 28.07 | 29.9 |
| CDY01503 | Canola | cytosol | 18.16 | 29.73 |
| CDY51561 | Canola | nucleus | 23.82 | 29.71 |
| CDY45364 | Canola | nucleus | 25.24 | 29.16 |
| CDY34355 | Canola | nucleus | 25.94 | 29.1 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 24.76 | 29.01 |
| CDY41028 | Canola | nucleus, plastid | 15.8 | 27.02 |
| CDY41027 | Canola | cytosol | 16.75 | 26.69 |
| CDY03203 | Canola | nucleus | 22.17 | 26.26 |
| CDY26692 | Canola | nucleus | 18.63 | 26.07 |
| CDY30005 | Canola | nucleus | 23.35 | 25.98 |
| CDY26694 | Canola | cytosol, plastid | 16.04 | 25.95 |
| CDY26693 | Canola | plastid | 16.51 | 25.93 |
| CDY39751 | Canola | nucleus | 23.35 | 25.92 |
| CDY46385 | Canola | nucleus | 23.35 | 25.92 |
| CDY21122 | Canola | nucleus | 23.58 | 25.91 |
| CDX78814 | Canola | nucleus | 24.76 | 25.8 |
| CDY35172 | Canola | nucleus | 21.46 | 25.78 |
| CDY05594 | Canola | nucleus | 21.46 | 25.56 |
| CDY52477 | Canola | nucleus | 22.17 | 25.54 |
| CDY65362 | Canola | nucleus | 22.41 | 25.54 |
| CDY52506 | Canola | nucleus | 20.99 | 25.5 |
| CDY08882 | Canola | nucleus | 25.94 | 25.29 |
| CDY01506 | Canola | nucleus | 17.92 | 25.25 |
| CDY44500 | Canola | nucleus | 25.0 | 25.24 |
| CDX76549 | Canola | nucleus | 26.18 | 25.23 |
| CDY68252 | Canola | nucleus | 17.22 | 24.58 |
| CDY26691 | Canola | cytosol, plastid | 17.92 | 24.44 |
| CDY13231 | Canola | nucleus | 21.46 | 22.2 |
Protein Annotations
| EnsemblPlants:CDY32624 | EnsemblPlantsGene:GSBRNA2T00052655001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF18 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY32624 | ProteinID:CDY32624.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EF3FE2 | UniProt:A0A078H5B0 | MapMan:35.1 | : | : |
Description
BnaC03g15920DBnaC03g15920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5B0]
Coordinates
chrLK032297:+:302573..304899
Molecular Weight (calculated)
44444.8 Da
IEP (calculated)
5.496
GRAVY (calculated)
-0.506
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MEERGGTSNI ITSFGLKQHV APPPPSGGGV YQMDPPRSEN PNPFPAGLPN TTAAAAASAS AVAAKATENA APPFSLTMPV ENSSAELAKK KRGRPRKYNP
101: DGSLAVTLSP MPLSSSVPLS TAFVSQKRGR GRGRGRGRGR GRVEQPPNNN SWVKNPQMFE FQNSSPVVGT AADVVTSASF TPYVLTVNAG EDVTMKIMTF
201: SQQEGSRAIC ILSANGPISN VTLRQSTTSG GTLTYEGHFE ILSLTGSFIP SESGGTRSRA GGMSVSLAGP DGRVFGGGLA GLFIAAGPVQ VMVGTFVAGG
301: QEESQQQQQM KKQRGERLGI PTTTQASNIS FGGGSAEDPK ARYNGLNKPV VIQPPPVSAP PMSFSHEPST NAAQGYYRNN TADHIRDLFS SLPGEDDEED
401: EENLEGEDGE EFGVHTESDT EVPS
101: DGSLAVTLSP MPLSSSVPLS TAFVSQKRGR GRGRGRGRGR GRVEQPPNNN SWVKNPQMFE FQNSSPVVGT AADVVTSASF TPYVLTVNAG EDVTMKIMTF
201: SQQEGSRAIC ILSANGPISN VTLRQSTTSG GTLTYEGHFE ILSLTGSFIP SESGGTRSRA GGMSVSLAGP DGRVFGGGLA GLFIAAGPVQ VMVGTFVAGG
301: QEESQQQQQM KKQRGERLGI PTTTQASNIS FGGGSAEDPK ARYNGLNKPV VIQPPPVSAP PMSFSHEPST NAAQGYYRNN TADHIRDLFS SLPGEDDEED
401: EENLEGEDGE EFGVHTESDT EVPS
001: MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
Arabidopsis Description
AHL4AT-hook motif nuclear-localized protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.