Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029164.1-P | Field mustard | nucleus | 99.53 | 99.29 |
| CDY32624 | Canola | nucleus | 96.69 | 96.46 |
| CDY00488 | Canola | nucleus | 85.58 | 84.38 |
| CDX99902 | Canola | nucleus | 82.98 | 79.95 |
| AT5G51590.1 | Thale cress | nucleus | 78.96 | 79.71 |
| CDX91598 | Canola | nucleus | 76.36 | 77.09 |
| CDY65097 | Canola | nucleus | 76.12 | 76.85 |
| CDX92693 | Canola | nucleus | 61.7 | 65.91 |
| CDY49703 | Canola | nucleus | 61.7 | 65.41 |
| CDX94457 | Canola | nucleus | 57.45 | 64.29 |
| CDX89422 | Canola | nucleus | 56.74 | 62.5 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 39.01 | 47.01 |
| KRH34345 | Soybean | nucleus | 36.17 | 46.36 |
| KRG92455 | Soybean | nucleus | 35.93 | 46.06 |
| Solyc03g007150.2.1 | Tomato | nucleus | 34.52 | 44.92 |
| CDY16785 | Canola | nucleus | 41.13 | 44.39 |
| CDX87241 | Canola | nucleus | 40.9 | 44.25 |
| CDY00271 | Canola | nucleus | 42.08 | 44.17 |
| PGSC0003DMT400071865 | Potato | plastid | 31.91 | 43.83 |
| CDY07239 | Canola | plasma membrane | 23.88 | 43.72 |
| CDX86910 | Canola | nucleus | 41.13 | 43.61 |
| KRH09229 | Soybean | nucleus | 34.99 | 43.02 |
| CDY30710 | Canola | nucleus | 40.66 | 42.89 |
| KRH38723 | Soybean | nucleus | 34.75 | 42.73 |
| CDY07238 | Canola | nucleus | 31.68 | 42.41 |
| CDX84679 | Canola | nucleus | 26.24 | 42.37 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 26.24 | 42.37 |
| PGSC0003DMT400079651 | Potato | nucleus | 33.81 | 41.33 |
| Solyc06g035430.2.1 | Tomato | nucleus | 33.1 | 40.46 |
| CDX98767 | Canola | nucleus | 31.44 | 40.43 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 31.68 | 39.88 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 30.97 | 39.82 |
| CDY04392 | Canola | nucleus | 25.06 | 39.55 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 35.46 | 39.37 |
| CDY41291 | Canola | nucleus | 27.66 | 38.36 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 34.52 | 38.22 |
| CDY47428 | Canola | nucleus | 27.9 | 38.19 |
| CDX82971 | Canola | plastid | 18.44 | 36.28 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 33.33 | 36.15 |
| Os08t0118000-01 | Rice | nucleus | 30.97 | 35.22 |
| TraesCS7B01G215600.1 | Wheat | plastid | 31.21 | 33.5 |
| HORVU7Hr1G075040.1 | Barley | plastid | 30.97 | 33.33 |
| KXG24283 | Sorghum | plastid | 30.73 | 33.08 |
| TraesCS7D01G312100.1 | Wheat | plastid | 30.97 | 33.0 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 30.5 | 32.99 |
| TraesCS7A01G315100.1 | Wheat | plastid | 30.97 | 32.91 |
| CDY37704 | Canola | nucleus | 28.37 | 32.0 |
| CDY58791 | Canola | nucleus | 24.59 | 31.71 |
| CDY37070 | Canola | nucleus | 25.53 | 31.67 |
| CDY42495 | Canola | nucleus | 25.3 | 31.66 |
| CDX89109 | Canola | nucleus | 25.06 | 31.64 |
| CDX71746 | Canola | nucleus | 25.3 | 31.1 |
| CDY48928 | Canola | nucleus | 25.06 | 30.81 |
| CDY27354 | Canola | nucleus | 25.3 | 30.66 |
| CDY25500 | Canola | nucleus | 26.71 | 30.54 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 28.61 | 30.4 |
| CDY51561 | Canola | nucleus | 24.35 | 30.29 |
| CDY01503 | Canola | cytosol | 18.2 | 29.73 |
| CDY45364 | Canola | nucleus | 25.77 | 29.7 |
| CDY34355 | Canola | nucleus | 26.48 | 29.63 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 25.3 | 29.56 |
| CDY41028 | Canola | nucleus, plastid | 16.31 | 27.82 |
| CDY41027 | Canola | cytosol | 17.26 | 27.44 |
| CDY30005 | Canola | nucleus | 24.11 | 26.77 |
| CDY26692 | Canola | nucleus | 19.15 | 26.73 |
| CDY26694 | Canola | cytosol, plastid | 16.55 | 26.72 |
| CDY26693 | Canola | plastid | 17.02 | 26.67 |
| CDY39751 | Canola | nucleus | 23.88 | 26.44 |
| CDY46385 | Canola | nucleus | 23.88 | 26.44 |
| CDY21122 | Canola | nucleus | 24.11 | 26.42 |
| CDY03203 | Canola | nucleus | 22.22 | 26.26 |
| CDY05594 | Canola | nucleus | 21.99 | 26.12 |
| CDY52477 | Canola | nucleus | 22.7 | 26.09 |
| CDY65362 | Canola | nucleus | 22.93 | 26.08 |
| CDY52506 | Canola | nucleus | 21.51 | 26.07 |
| CDX78814 | Canola | nucleus | 25.06 | 26.04 |
| CDY01506 | Canola | nucleus | 18.44 | 25.91 |
| CDY35172 | Canola | nucleus | 21.51 | 25.78 |
| CDY08882 | Canola | nucleus | 26.24 | 25.52 |
| CDY44500 | Canola | nucleus | 25.3 | 25.48 |
| CDX76549 | Canola | nucleus | 26.48 | 25.45 |
| CDY68252 | Canola | nucleus | 17.73 | 25.25 |
| CDY26691 | Canola | cytosol, plastid | 18.44 | 25.08 |
| CDY13231 | Canola | nucleus | 21.99 | 22.68 |
Protein Annotations
| EnsemblPlants:CDY38874 | EnsemblPlantsGene:GSBRNA2T00066716001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF18 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDY38874 | ProteinID:CDY38874.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EDE211 | UniProt:A0A078HNC0 | MapMan:35.1 | : | : |
Description
BnaA03g13050DBnaA03g13050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNC0]
Coordinates
chrLK032434:-:127483..129847
Molecular Weight (calculated)
44544.8 Da
IEP (calculated)
5.482
GRAVY (calculated)
-0.560
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEREGTSNM ITSFGLKQHV APPPSSGGVV YQMDPPRSEN PNPFPAGLPN TTAAAASASA VAAKATENAA PPFSLTMPVE NSSAELAKKK RGRPRKYNPD
101: GSLAVTLSPM PLSSSVPLST GFASQKRGRG RGRGRGRGRG RVEQPPNNNS WVKNPQMFEF QNSSPVVGAA DVVTSASFTP HVLTVNAGED VTMKIMTFSQ
201: QEGSRAICIL SANGPISNVT LRQSTTSGGT LTYEGHFEIL SLTGSFIPSE SGGTRSRAGG MSVSLAGPDG RVFGGGLAGL FIAAGPVQVM VGTFVAGGQE
301: ETQQQQQQMK KQRGERFGIP TTTQASNISF GGGSAEDPKA RYNGPNKPVV IQPPPVSAPP MSFQHEQSTN AAQGYYRNNT ADHIRDLFSS LPGEDDEEDE
401: ENLEGEDGED FGVHTESDTE VPS
101: GSLAVTLSPM PLSSSVPLST GFASQKRGRG RGRGRGRGRG RVEQPPNNNS WVKNPQMFEF QNSSPVVGAA DVVTSASFTP HVLTVNAGED VTMKIMTFSQ
201: QEGSRAICIL SANGPISNVT LRQSTTSGGT LTYEGHFEIL SLTGSFIPSE SGGTRSRAGG MSVSLAGPDG RVFGGGLAGL FIAAGPVQVM VGTFVAGGQE
301: ETQQQQQQMK KQRGERFGIP TTTQASNISF GGGSAEDPKA RYNGPNKPVV IQPPPVSAPP MSFQHEQSTN AAQGYYRNNT ADHIRDLFSS LPGEDDEEDE
401: ENLEGEDGED FGVHTESDTE VPS
001: MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS
Arabidopsis Description
AHL4AT-hook motif nuclear-localized protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.