Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89422 | Canola | nucleus | 96.3 | 94.79 |
| Bra013886.1-P | Field mustard | nucleus | 95.24 | 94.49 |
| CDX92693 | Canola | nucleus | 85.45 | 81.57 |
| CDY49703 | Canola | nucleus | 85.19 | 80.7 |
| AT4G25320.1 | Thale cress | nucleus | 82.28 | 76.98 |
| CDY38874 | Canola | nucleus | 64.29 | 57.45 |
| CDY32624 | Canola | nucleus | 64.02 | 57.08 |
| CDY00488 | Canola | nucleus | 64.29 | 56.64 |
| CDY65097 | Canola | nucleus | 60.05 | 54.18 |
| CDX91598 | Canola | nucleus | 59.52 | 53.7 |
| CDX99902 | Canola | nucleus | 61.38 | 52.85 |
| KRH34345 | Soybean | nucleus | 39.95 | 45.76 |
| KRG92455 | Soybean | nucleus | 39.68 | 45.45 |
| PGSC0003DMT400071865 | Potato | plastid | 36.24 | 44.48 |
| VIT_16s0022g01810.t01 | Wine grape | cytosol, nucleus, peroxisome | 41.01 | 44.16 |
| Solyc03g007150.2.1 | Tomato | nucleus | 37.83 | 44.0 |
| KRH38723 | Soybean | nucleus | 38.89 | 42.73 |
| KRH09229 | Soybean | nucleus | 38.62 | 42.44 |
| CDY07239 | Canola | plasma membrane | 25.93 | 42.42 |
| Solyc06g035430.2.1 | Tomato | nucleus | 37.57 | 41.04 |
| PGSC0003DMT400079651 | Potato | nucleus | 37.04 | 40.46 |
| CDX87241 | Canola | nucleus | 41.8 | 40.41 |
| CDY04392 | Canola | nucleus | 28.57 | 40.3 |
| CDY00271 | Canola | nucleus | 42.59 | 39.95 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 35.45 | 39.88 |
| CDY07238 | Canola | nucleus | 33.33 | 39.87 |
| CDY16785 | Canola | nucleus | 41.27 | 39.8 |
| CDX86910 | Canola | nucleus | 41.53 | 39.35 |
| CDX84679 | Canola | nucleus | 27.25 | 39.31 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 27.25 | 39.31 |
| CDY47428 | Canola | nucleus | 32.01 | 39.16 |
| CDX98767 | Canola | nucleus | 33.86 | 38.91 |
| CDX94122 | Canola | cytosol, nucleus, plasma membrane | 33.86 | 38.91 |
| CDX82971 | Canola | plastid | 21.96 | 38.6 |
| CDY30710 | Canola | nucleus | 40.74 | 38.4 |
| CDY41291 | Canola | nucleus | 30.42 | 37.7 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 37.83 | 37.43 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 37.57 | 37.27 |
| Os08t0118000-01 | Rice | nucleus | 35.71 | 36.29 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 35.98 | 34.87 |
| KXG24283 | Sorghum | plastid | 34.92 | 33.59 |
| TraesCS7B01G215600.1 | Wheat | plastid | 34.92 | 33.5 |
| Zm00001d049661_P001 | Maize | cytosol, peroxisome, plasma membrane | 34.13 | 32.99 |
| HORVU7Hr1G075040.1 | Barley | plastid | 34.13 | 32.82 |
| TraesCS7D01G312100.1 | Wheat | plastid | 34.39 | 32.75 |
| TraesCS7A01G315100.1 | Wheat | plastid | 34.39 | 32.66 |
| CDX89109 | Canola | nucleus | 26.19 | 29.55 |
| CDY42495 | Canola | nucleus | 26.19 | 29.29 |
| CDY37070 | Canola | nucleus | 26.19 | 29.03 |
| CDY58791 | Canola | nucleus | 25.13 | 28.96 |
| CDY01503 | Canola | cytosol | 19.84 | 28.96 |
| CDY41028 | Canola | nucleus, plastid | 18.78 | 28.63 |
| CDY37704 | Canola | nucleus | 28.04 | 28.27 |
| CDY51561 | Canola | nucleus | 25.4 | 28.24 |
| CDX71746 | Canola | nucleus | 25.66 | 28.2 |
| CDY27354 | Canola | nucleus | 25.93 | 28.08 |
| CDY48928 | Canola | nucleus | 25.4 | 27.91 |
| CDY25500 | Canola | nucleus | 26.98 | 27.57 |
| CDY41027 | Canola | cytosol | 19.31 | 27.44 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 28.84 | 27.39 |
| CDY26692 | Canola | nucleus | 21.43 | 26.73 |
| CDY05594 | Canola | nucleus | 25.13 | 26.69 |
| CDY45364 | Canola | nucleus | 25.66 | 26.43 |
| CDY52506 | Canola | nucleus | 24.34 | 26.36 |
| CDY26694 | Canola | cytosol, plastid | 18.25 | 26.34 |
| CDY26693 | Canola | plastid | 18.78 | 26.3 |
| CDY64088 | Canola | nucleus, plasma membrane, plastid | 25.13 | 26.24 |
| CDY34355 | Canola | nucleus | 26.19 | 26.19 |
| CDY52477 | Canola | nucleus | 24.87 | 25.54 |
| CDY65362 | Canola | nucleus | 24.87 | 25.27 |
| CDY68252 | Canola | nucleus | 19.84 | 25.25 |
| CDY26691 | Canola | cytosol, plastid | 20.63 | 25.08 |
| CDX78814 | Canola | nucleus | 26.98 | 25.06 |
| CDY03203 | Canola | nucleus | 23.55 | 24.86 |
| CDY30005 | Canola | nucleus | 24.87 | 24.67 |
| CDY01506 | Canola | nucleus | 19.58 | 24.58 |
| CDY44500 | Canola | nucleus | 27.25 | 24.52 |
| CDY21122 | Canola | nucleus | 24.87 | 24.35 |
| CDY08882 | Canola | nucleus | 27.78 | 24.14 |
| CDY35172 | Canola | nucleus | 22.49 | 24.08 |
| CDX76549 | Canola | nucleus | 27.78 | 23.86 |
| CDY46385 | Canola | nucleus | 23.81 | 23.56 |
| CDY39751 | Canola | nucleus | 23.81 | 23.56 |
| CDY13231 | Canola | nucleus | 24.07 | 22.2 |
Protein Annotations
| EnsemblPlants:CDX94457 | EnsemblPlantsGene:GSBRNA2T00157627001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF18 | PFAM:PF03479 | PFscan:PS51742 | ProteinID:CDX94457 | ProteinID:CDX94457.1 | SEG:seg |
| SUPFAM:SSF117856 | UniParc:UPI0004EF49C3 | MapMan:35.1 | : | : | : |
Description
BnaC01g17270D
Coordinates
chrLK031881:-:1354289..1356320
Molecular Weight (calculated)
40257.9 Da
IEP (calculated)
5.463
GRAVY (calculated)
-0.563
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEREGTNNN TTSLNHQAAA AYPMDPPRPD NPNPFSAPPT TSSVGNASPP FSLTMPAETA SSEQKKKRGR PRKYNPDGTL AVTLSPMPIS SSVPLTSGLP
101: PRKRGRGRGR SSQWLKKPEM FQFNRSPVET SFAGVGTAAD FVGANFTPHI LPVNAGEDVT MKIMTFSQQG SRAICILSAN GLISNVTLRQ TTTSGGTLTY
201: EGRFEILSLT GLFMQTDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVAT FVAAQEQSHL QLAKERRQRF GAQPPSISFN ITAEERKARF
301: ERLNNSVTVP APTPSYPHDN TGNAVHSYYT NSVNHVKDPF SSIQGGGGED EGEEDEGGGD ELEGEDEEFG ESDNEIPS
101: PRKRGRGRGR SSQWLKKPEM FQFNRSPVET SFAGVGTAAD FVGANFTPHI LPVNAGEDVT MKIMTFSQQG SRAICILSAN GLISNVTLRQ TTTSGGTLTY
201: EGRFEILSLT GLFMQTDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVAT FVAAQEQSHL QLAKERRQRF GAQPPSISFN ITAEERKARF
301: ERLNNSVTVP APTPSYPHDN TGNAVHSYYT NSVNHVKDPF SSIQGGGGED EGEEDEGGGD ELEGEDEEFG ESDNEIPS
001: MEEREGTNIN NNITSSFGLK QQHEAAASDG GYSMDPPPRP ENPNPFLVPP TTVPAAATVA AAVTENAATP FSLTMPTENT SAEQLKKKRG RPRKYNPDGT
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS
101: LVVTLSPMPI SSSVPLTSEF PPRKRGRGRG KSNRWLKKSQ MFQFDRSPVD TNLAGVGTAD FVGANFTPHV LIVNAGEDVT MKIMTFSQQG SRAICILSAN
201: GPISNVTLRQ SMTSGGTLTY EGRFEILSLT GSFMQNDSGG TRSRAGGMSV CLAGPDGRVF GGGLAGLFLA AGPVQVMVGT FIAGQEQSQL ELAKERRLRF
301: GAQPSSISFN ISAEERKARF ERLNKSVAIP APTTSYTHVN TTNAVHSYYT NSVNHVKDPF SSIPVGGGGG GEVGEEEGEE DDDELEGEDE EFGGDSQSDN
401: EIPS
Arabidopsis Description
AHL3AT-hook motif nuclear-localized protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.