CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71746
CDX73692
CDX78039
CDX89109
CDX90634
CDY25500
CDY29046
CDY34355
CDY42495
CDY45364
CDY48928
CDY51561
CDY58791
CDY64088

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	CDY25500	AT1G63470.1	21798944
AT4G17950.1	CDY34355	AT1G63470.1	21798944
AT4G17950.1	CDY45364	AT1G63470.1	21798944
AT4G17950.1	CDY64088	AT1G63470.1	21798944
AT4G17950.1	CDX73692	AT3G51780.1	21798944
AT4G17950.1	CDX78039	AT3G51780.1	21798944
AT4G17950.1	CDX90634	AT3G51780.1	21798944
AT4G17950.1	CDY29046	AT3G51780.1	21798944
AT4G17950.1	CDX71746	AT3G61310.1	21798944
AT4G17950.1	CDX89109	AT3G61310.1	21798944
AT4G17950.1	CDY42495	AT3G61310.1	21798944
AT4G17950.1	CDY48928	AT3G61310.1	21798944
AT4G17950.1	CDY51561	AT3G61310.1	21798944
AT4G17950.1	CDY58791	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26693	Canola	plastid	90.84	88.15
CDY41027	Canola	cytosol	88.17	86.84
CDY41028	Canola	nucleus, plastid	57.25	60.48
CDY68252	Canola	nucleus	67.18	59.26
CDY26692	Canola	nucleus	68.32	59.08
CDY26691	Canola	cytosol, plastid	67.94	57.23
CDY01506	Canola	nucleus	55.73	48.51
CDY01503	Canola	cytosol	44.27	44.79
CDX78814	Canola	nucleus	59.16	38.08
CDY44500	Canola	nucleus	60.31	37.62
CDY08882	Canola	nucleus	60.69	36.55
CDX76549	Canola	nucleus	60.69	36.14
AT4G17950.1	Thale cress	nucleus	59.92	35.76
CDY03203	Canola	nucleus	44.66	32.68
CDY35172	Canola	nucleus	43.89	32.58
Solyc04g053090.1.1	Tomato	plastid	20.61	31.95
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	22.9	31.58
Solyc04g053100.1.1	Tomato	plastid	18.7	29.52
CDY07239	Canola	plasma membrane	25.95	29.44
Os10t0572900-02	Rice	nucleus	27.1	28.29
CDX84679	Canola	nucleus	28.24	28.24
CDX79537	Canola	mitochondrion, nucleus, plastid	28.24	28.24
VIT_02s0012g00900.t01	Wine grape	nucleus	36.64	27.2
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	29.77	25.41
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	18.32	25.4
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	32.82	24.43
CDY07238	Canola	nucleus	29.39	24.37
KRH28286	Soybean	plastid	30.92	23.89
KRH58200	Soybean	nucleus	32.82	23.76
OQU82226	Sorghum	plastid	31.3	23.63
PGSC0003DMT400052826	Potato	nucleus	32.44	23.61
KRH77206	Soybean	nucleus	30.15	23.37
CDX71746	Canola	nucleus	30.53	23.26
Os04t0589900-01	Rice	nucleus	33.59	23.22
GSMUA_Achr2P09840_001	Banana	nucleus	31.3	22.97
CDY42495	Canola	nucleus	29.39	22.78
KRH04337	Soybean	nucleus	30.92	22.75
CDY48928	Canola	nucleus	29.77	22.67
CDY47428	Canola	nucleus	26.34	22.33
CDX89109	Canola	nucleus	28.24	22.09
CDY51561	Canola	nucleus	28.24	21.76
CDY37070	Canola	nucleus	28.24	21.7
CDY58791	Canola	nucleus	27.1	21.65
CDX98767	Canola	nucleus	27.1	21.58
Zm00001d026036_P001	Maize	nucleus	32.82	21.39
CDY37704	Canola	nucleus	30.53	21.33
CDX94122	Canola	cytosol, nucleus, plasma membrane	26.72	21.28
CDY27354	Canola	nucleus	28.24	21.2
TraesCS2A01G449500.1	Wheat	plastid	32.44	20.73
CDY41291	Canola	nucleus	24.05	20.66
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	32.44	20.63
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	32.44	20.63
CDY04392	Canola	nucleus	20.99	20.52
Solyc08g006950.2.1	Tomato	nucleus	30.53	20.46
CDY52506	Canola	nucleus	26.72	20.06
Zm00001d030053_P003	Maize	plastid	30.92	19.42
CDY16785	Canola	nucleus	29.01	19.39
CDY05594	Canola	nucleus	26.34	19.38
CDY23720	Canola	extracellular, plasma membrane, vacuole	29.39	19.35
CDX87241	Canola	nucleus	28.63	19.18
CDY30005	Canola	nucleus	27.86	19.16
KXG38867	Sorghum	plastid	30.92	19.15
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	31.3	19.11
CDY25500	Canola	nucleus	26.72	18.92
CDY21122	Canola	nucleus	27.86	18.91
CDY65362	Canola	nucleus	26.72	18.82
CDY52477	Canola	nucleus	26.34	18.75
CDY00271	Canola	nucleus	28.63	18.61
CDX86910	Canola	nucleus	28.24	18.55
CDY45364	Canola	nucleus	25.95	18.53
CDY34355	Canola	nucleus	26.72	18.52
CDY30710	Canola	nucleus	28.24	18.45
CDX94457	Canola	nucleus	26.34	18.25
CDY64088	Canola	nucleus, plasma membrane, plastid	25.19	18.23
TraesCS1B01G206100.2	Wheat	nucleus	30.15	17.52
CDX89422	Canola	nucleus	25.57	17.45
CDX92693	Canola	nucleus	26.34	17.42
TraesCS1A01G190900.1	Wheat	nucleus	30.15	17.4
TraesCS1D01G194900.2	Wheat	nucleus	30.15	17.4
CDY13231	Canola	nucleus	27.1	17.32
CDY49703	Canola	nucleus	26.34	17.29
CDX82971	Canola	plastid	14.12	17.21
HORVU1Hr1G049980.12	Barley	nucleus	30.15	17.03
CDY38874	Canola	nucleus	26.72	16.55
CDY00488	Canola	nucleus	26.72	16.32
CDY39751	Canola	nucleus	23.66	16.23
CDY46385	Canola	nucleus	23.66	16.23
CDX91598	Canola	nucleus	25.95	16.23
CDY32624	Canola	nucleus	25.95	16.04
CDY65097	Canola	nucleus	25.57	15.99
CDX99902	Canola	nucleus	26.72	15.95

Protein Annotations

EnsemblPlants:CDY26694	EnsemblPlantsGene:GSBRNA2T00035590001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF44	PFAM:PF03479	PFscan:PS51742	ProteinID:CDY26694	ProteinID:CDY26694.1	SEG:seg
SUPFAM:SSF117856	UniParc:UPI0004EE5EEF	UniProt:A0A078GN81	MapMan:35.1	:	:

Description

BnaA06g13280DBnaA06g13280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN81]

Coordinates

chrLK032193:+:171323..172475

Molecular Weight (calculated)

26657.3 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.322

Length

262 amino acids

Sequence
(BLAST)

001: MDSKETQQQQ NRNAAAALAG HTSTSQAMHN RSVGGLSDLR QPRAMPYSRP VQQPWMLLGV EQIARARARA YAPPDGGDSG GGANAGPPAR GGGEGLFTAH
101: VININAGEDI AAKLLAFVNQ KPRHVCVLSA LGDVSVAELS NNPLGLGLVK YEGPYVITNM SGTFSNTESN GTVTRTGNLN VSLAGPDFKT VGGRVGGMLV
201: AGSPFQVIVG SFVPEGVKLS AASGPDNVLN SSGGGGPGLP QSQGPSKSSE ENASKSPGNN AQ

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.