Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 43.14 | 81.05 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 77.31 | 78.41 |
| Os10t0572900-02 | Rice | nucleus | 46.78 | 66.53 |
| HORVU2Hr1G105800.13 | Barley | cytosol, vacuole | 44.82 | 52.12 |
| HORVU7Hr1G065300.2 | Barley | mitochondrion, plastid | 26.89 | 50.79 |
| Zm00001d030053_P003 | Maize | plastid | 58.82 | 50.36 |
| OQU82226 | Sorghum | plastid | 48.46 | 49.86 |
| KXG38867 | Sorghum | plastid | 58.82 | 49.65 |
| Zm00001d047042_P004 | Maize | cytosol, nucleus, plasma membrane | 58.26 | 48.48 |
| Os04t0589900-01 | Rice | nucleus | 50.14 | 47.23 |
| VIT_02s0012g00900.t01 | Wine grape | nucleus | 46.5 | 47.03 |
| GSMUA_Achr7P20540_001 | Banana | nucleus | 38.38 | 46.76 |
| GSMUA_Achr6P03420_001 | Banana | nucleus | 46.78 | 46.39 |
| GSMUA_Achr3P03710_001 | Banana | nucleus | 46.78 | 45.75 |
| TraesCS1B01G206100.2 | Wheat | nucleus | 57.7 | 45.68 |
| TraesCS1D01G194900.2 | Wheat | nucleus | 57.7 | 45.37 |
| TraesCS1A01G190900.1 | Wheat | nucleus | 57.7 | 45.37 |
| PGSC0003DMT400045147 | Potato | plastid | 41.18 | 44.55 |
| HORVU1Hr1G049980.12 | Barley | nucleus | 57.7 | 44.4 |
| GSMUA_Achr9P12360_001 | Banana | extracellular, vacuole | 50.42 | 44.23 |
| Zm00001d026036_P001 | Maize | nucleus | 49.58 | 44.03 |
| Solyc04g053090.1.1 | Tomato | plastid | 20.73 | 43.79 |
| TraesCS2B01G470900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 48.74 | 42.23 |
| TraesCS2A01G449500.1 | Wheat | plastid | 48.46 | 42.2 |
| TraesCS2D01G448900.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 48.18 | 41.75 |
| CDY01503 | Canola | cytosol | 30.25 | 41.7 |
| KRH58200 | Soybean | nucleus | 41.74 | 41.16 |
| Solyc04g053100.1.1 | Tomato | plastid | 18.49 | 39.76 |
| GSMUA_Achr5P23820_001 | Banana | cytosol, nucleus, plasma membrane | 46.78 | 39.67 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 36.69 | 39.34 |
| KRH04337 | Soybean | nucleus | 39.22 | 39.33 |
| KRH28286 | Soybean | plastid | 36.41 | 38.35 |
| KRH77206 | Soybean | nucleus | 35.85 | 37.87 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 35.57 | 37.8 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 20.73 | 37.76 |
| PGSC0003DMT400052826 | Potato | nucleus | 37.82 | 37.5 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 35.01 | 37.2 |
| Solyc08g077030.2.1 | Tomato | nucleus | 42.02 | 36.67 |
| GSMUA_Achr2P20250_001 | Banana | cytosol, peroxisome, plastid | 37.25 | 36.24 |
| GSMUA_Achr6P13410_001 | Banana | cytosol, nucleus, peroxisome | 36.69 | 35.79 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 34.45 | 35.55 |
| AT5G46640.1 | Thale cress | nucleus | 38.1 | 35.23 |
| GSMUA_Achr11P... | Banana | nucleus | 36.13 | 34.77 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 36.97 | 34.65 |
| GSMUA_Achr11P... | Banana | nucleus | 36.13 | 34.4 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 36.69 | 34.29 |
| Solyc08g006950.2.1 | Tomato | nucleus | 36.41 | 33.25 |
| CDX78814 | Canola | nucleus | 37.82 | 33.17 |
| CDY03203 | Canola | nucleus | 32.77 | 32.68 |
| CDY41027 | Canola | cytosol | 24.09 | 32.33 |
| CDY35172 | Canola | nucleus | 31.93 | 32.29 |
| Bra017536.1-P | Field mustard | nucleus | 31.93 | 32.29 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 29.41 | 32.21 |
| Bra021027.1-P | Field mustard | nucleus | 36.97 | 32.2 |
| CDY44500 | Canola | nucleus | 37.82 | 32.14 |
| CDY01506 | Canola | nucleus | 26.89 | 31.89 |
| CDY26694 | Canola | cytosol, plastid | 22.97 | 31.3 |
| AT4G17950.1 | Thale cress | nucleus | 38.38 | 31.21 |
| CDY41028 | Canola | nucleus, plastid | 21.57 | 31.05 |
| CDY08882 | Canola | nucleus | 37.82 | 31.03 |
| Bra025717.1-P | Field mustard | nucleus | 26.33 | 31.02 |
| CDY26692 | Canola | nucleus | 26.33 | 31.02 |
| CDY68252 | Canola | nucleus | 25.77 | 30.98 |
| Bra025716.1-P | Field mustard | nucleus | 23.25 | 30.86 |
| CDY26693 | Canola | plastid | 23.25 | 30.74 |
| CDX76549 | Canola | nucleus | 37.53 | 30.45 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 32.49 | 29.74 |
| Bra013270.1-P | Field mustard | nucleus | 35.29 | 29.58 |
| CDY26691 | Canola | cytosol, plastid | 25.49 | 29.26 |
| Bra025718.1-P | Field mustard | nucleus, plastid | 24.65 | 28.95 |
| GSMUA_Achr3P03040_001 | Banana | nucleus, peroxisome, plasma membrane | 36.41 | 26.86 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P09840_001 | EnsemblPlants:GSMUA_Achr2T09840_001 | EnsemblPlantsGene:GSMUA_Achr2G09840_001 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31500 | PANTHER:PTHR31500:SF25 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 |
| UniParc:UPI000296042D | UniProt:M0S6M5 | MapMan:35.1 | : | : | : |
Description
AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G09840_001]
Coordinates
chr2:+:13230467..13234443
Molecular Weight (calculated)
37013.8 Da
IEP (calculated)
9.641
GRAVY (calculated)
-0.315
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARELPRVS SLQPPTVVVG PSSYGAGGST IDPVVAPNTA GMTQGMRLSF TPMASSAPKP VDTTGSLYQG DDVSGMRQTS VFNMGELTKK KRGRPRKYGP
101: DGSMSLALTP PSSALGFSSN PMSDPAAKHR GRPPGSGKKQ QLDALGAPGI GFTPHIITVK DIASKIMAFS QQGSRTVCVL SANGAISDVT LRQPAISGGT
201: VTYEGRFDII SLSGSFLLTE EGSTRSRSGG LSVAIAGSDG RILGGGVAGM LVAATPVQVV VASFITEKKK PQPEPLRWEP SSAPPQMASF GATLTVSPPT
301: EGTSSESSDD RGSPTNQNGG TCDNSTQPVQ SAYPSFISWS HSVNENRHNS DMKVMPL
101: DGSMSLALTP PSSALGFSSN PMSDPAAKHR GRPPGSGKKQ QLDALGAPGI GFTPHIITVK DIASKIMAFS QQGSRTVCVL SANGAISDVT LRQPAISGGT
201: VTYEGRFDII SLSGSFLLTE EGSTRSRSGG LSVAIAGSDG RILGGGVAGM LVAATPVQVV VASFITEKKK PQPEPLRWEP SSAPPQMASF GATLTVSPPT
301: EGTSSESSDD RGSPTNQNGG TCDNSTQPVQ SAYPSFISWS HSVNENRHNS DMKVMPL
001: MDSRDIPPSH NQLQPPPGML MSHYRNPNAA ASPLMVPTST SQPIQHPRLP FGNQQQSQTF HQQQQQQMDQ KTLESLGFGD GSPSSQPMRF GIDDQNQQLQ
101: VKKKRGRPRK YTPDGSIALG LAPTSPLLSA ASNSYGEGGV GDSGGNGNSV DPPVKRNRGR PPGSSKKQLD ALGGTSGVGF TPHVIEVNTG EDIASKVMAF
201: SDQGSRTICI LSASGAVSRV MLRQASHSSG IVTYEGRFEI ITLSGSVLNY EVNGSTNRSG NLSVALAGPD GGIVGGSVVG NLVAATQVQV IVGSFVAEAK
301: KPKQSSVNIA RGQNPEPASA PANMLNFGSV SQGPSSESSE ENESGSPAMH RDNNNGIYGA QQQQQQQPLH PHQMQMYQHL WSNHGQ
101: VKKKRGRPRK YTPDGSIALG LAPTSPLLSA ASNSYGEGGV GDSGGNGNSV DPPVKRNRGR PPGSSKKQLD ALGGTSGVGF TPHVIEVNTG EDIASKVMAF
201: SDQGSRTICI LSASGAVSRV MLRQASHSSG IVTYEGRFEI ITLSGSVLNY EVNGSTNRSG NLSVALAGPD GGIVGGSVVG NLVAATQVQV IVGSFVAEAK
301: KPKQSSVNIA RGQNPEPASA PANMLNFGSV SQGPSSESSE ENESGSPAMH RDNNNGIYGA QQQQQQQPLH PHQMQMYQHL WSNHGQ
Arabidopsis Description
AHL8AT-hook motif nuclear-localized protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.