Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0122g00700.t01 | Wine grape | nucleus | 62.12 | 51.56 |
| CDX79537 | Canola | mitochondrion, nucleus, plastid | 45.39 | 50.76 |
| Bra022946.1-P | Field mustard | nucleus | 45.05 | 50.38 |
| CDX84679 | Canola | nucleus | 45.05 | 50.38 |
| GSMUA_Achr3P03710_001 | Banana | nucleus | 61.77 | 49.59 |
| GSMUA_Achr6P03420_001 | Banana | nucleus | 60.75 | 49.44 |
| GSMUA_Achr5P03370_001 | Banana | mitochondrion, plastid | 29.69 | 45.79 |
| GSMUA_Achr9P12360_001 | Banana | extracellular, vacuole | 62.8 | 45.21 |
| PGSC0003DMT400075370 | Potato | nucleus | 53.92 | 44.13 |
| Solyc12g094710.1.1 | Tomato | nucleus | 52.56 | 43.14 |
| AT2G33620.2 | Thale cress | nucleus | 51.19 | 42.73 |
| GSMUA_Achr5P20630_001 | Banana | nucleus, plasma membrane, plastid | 47.44 | 41.74 |
| GSMUA_Achr4P27240_001 | Banana | cytosol, extracellular, nucleus, plastid | 49.83 | 41.48 |
| GSMUA_Achr1P03070_001 | Banana | cytosol, extracellular, nucleus | 27.3 | 40.82 |
| Bra021865.1-P | Field mustard | nucleus | 47.78 | 40.0 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 45.39 | 39.58 |
| GSMUA_Achr5P23820_001 | Banana | cytosol, nucleus, plasma membrane | 56.31 | 39.19 |
| GSMUA_Achr8P11400_001 | Banana | nucleus | 45.39 | 38.44 |
| GSMUA_Achr2P09840_001 | Banana | nucleus | 46.76 | 38.38 |
| KRH60876 | Soybean | nucleus | 46.08 | 37.82 |
| KRH51558 | Soybean | nucleus | 45.73 | 37.75 |
| CDY37704 | Canola | nucleus | 48.12 | 37.6 |
| GSMUA_Achr7P06500_001 | Banana | cytosol, plasma membrane, plastid | 43.0 | 37.5 |
| GSMUA_Achr11P... | Banana | nucleus | 47.1 | 37.2 |
| GSMUA_Achr6P13410_001 | Banana | cytosol, nucleus, peroxisome | 45.73 | 36.61 |
| GSMUA_Achr11P... | Banana | nucleus | 46.76 | 36.53 |
| GSMUA_Achr2P20250_001 | Banana | cytosol, peroxisome, plastid | 45.05 | 35.97 |
| CDY23720 | Canola | extracellular, plasma membrane, vacuole | 48.81 | 35.93 |
| GSMUA_Achr1P19840_001 | Banana | nucleus | 44.71 | 34.38 |
| GSMUA_Achr4P30000_001 | Banana | nucleus | 37.88 | 34.05 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 43.0 | 32.98 |
| GSMUA_Achr2P03170_001 | Banana | cytosol, peroxisome, plasma membrane | 43.34 | 32.56 |
| PGSC0003DMT400075372 | Potato | cytosol, nucleus, peroxisome | 33.11 | 29.75 |
| Solyc12g019430.1.1 | Tomato | cytosol, plastid, vacuole | 18.77 | 28.65 |
| GSMUA_Achr3P03040_001 | Banana | nucleus, peroxisome, plasma membrane | 43.69 | 26.45 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P20540_001 | EnsemblPlants:GSMUA_Achr7T20540_001 | EnsemblPlantsGene:GSMUA_Achr7G20540_001 | Gene3D:3.30.1330.80 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:AT_hook_DNA-bd_motif | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31500 |
| PANTHER:PTHR31500:SF0 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SMART:SM00384 | SUPFAM:SSF117856 |
| UniParc:UPI0002955194 | UniProt:M0TJ91 | MapMan:35.1 | : | : | : |
Description
AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G20540_001]
Coordinates
chr7:-:23626350..23630421
Molecular Weight (calculated)
28992.4 Da
IEP (calculated)
10.222
GRAVY (calculated)
-0.049
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARFQPPVF NIKVVDGSNG IAAYESVPLG GGSVPSQYQG AGGGSNGSVG AGAGTGEPFK RKRGRPRKYG PDGKVILAVN PVSAGPAAPP TTGAFSAAAN
101: AAATAAAEGV KKARGRPPGS SKKKQLEALG SAGAGFIPHV ITVKVGEDVS AKIMAFSQQS TRAVCILSAN GAISNVTLRQ AATSGGTVTY EGRFEILSLS
201: GSFLLSESGG QRSRTGGLSV SLAGPDGHVL GGGVEGLLTA ASPVQIIVGS FTAEGKKEAE QAHASEPASG SGKLLMLGET IGTINPLTGS YSA
101: AAATAAAEGV KKARGRPPGS SKKKQLEALG SAGAGFIPHV ITVKVGEDVS AKIMAFSQQS TRAVCILSAN GAISNVTLRQ AATSGGTVTY EGRFEILSLS
201: GSFLLSESGG QRSRTGGLSV SLAGPDGHVL GGGVEGLLTA ASPVQIIVGS FTAEGKKEAE QAHASEPASG SGKLLMLGET IGTINPLTGS YSA
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.