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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr1P19840_001 nucleus
GSMUA_Achr2P03170_001 nucleus
GSMUA_Achr7P06500_001 nucleus
GSMUA_AchrUn_... nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25320.1 GSMUA_Achr1P19840_001 AT4G25320.1 23335615
AT4G25320.1 GSMUA_Achr2P03170_001 AT4G25320.1 23335615
AT4G25320.1 GSMUA_Achr7P06500_001 AT4G25320.1 23335615
AT4G25320.1 GSMUA_AchrUn_... AT4G25320.1 23335615
AT4G25320.1 GSMUA_Achr1P19840_001 AT5G51590.1 23335615
AT4G25320.1 GSMUA_Achr2P03170_001 AT5G51590.1 23335615
AT4G25320.1 GSMUA_Achr7P06500_001 AT5G51590.1 23335615
AT4G25320.1 GSMUA_AchrUn_... AT5G51590.1 23335615
AT4G25320.1 GSMUA_Achr1P19840_001 AT5G51590.1 23335615
AT4G25320.1 GSMUA_Achr2P03170_001 AT5G51590.1 23335615
AT4G25320.1 GSMUA_Achr7P06500_001 AT5G51590.1 23335615
AT4G25320.1 GSMUA_AchrUn_... AT5G51590.1 23335615
AT5G51590.1 GSMUA_Achr1P19840_001 AT5G51590.1 23335615
AT5G51590.1 GSMUA_Achr2P03170_001 AT5G51590.1 23335615
AT5G51590.1 GSMUA_Achr7P06500_001 AT5G51590.1 23335615
AT5G51590.1 GSMUA_AchrUn_... AT5G51590.1 23335615
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr7P06500_001 Banana cytosol, plasma membrane, plastid 67.19 76.19
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 69.55 69.37
Os08t0118000-01 Rice nucleus 57.22 58.6
GSMUA_Achr2P03170_001 Banana cytosol, peroxisome, plasma membrane 58.01 56.67
VIT_16s0022g01810.t01 Wine grape cytosol, nucleus, peroxisome 51.18 55.56
KXG24283 Sorghum plastid 56.17 54.45
TraesCS7B01G215600.1 Wheat plastid 56.17 54.31
Zm00001d049661_P001 Maize cytosol, peroxisome, plasma membrane 55.38 53.96
HORVU7Hr1G075040.1 Barley plastid 55.38 53.69
TraesCS7D01G312100.1 Wheat plastid 55.91 53.65
KRH34345 Soybean nucleus 46.46 53.64
KRG92455 Soybean nucleus 46.19 53.33
TraesCS7A01G315100.1 Wheat plastid 55.64 53.27
Solyc03g007150.2.1 Tomato nucleus 43.04 50.46
KRH09229 Soybean nucleus 45.41 50.29
KRH38723 Soybean nucleus 44.09 48.84
PGSC0003DMT400071865 Potato plastid 38.58 47.73
GSMUA_Achr5P03370_001 Banana mitochondrion, plastid 23.62 47.37
PGSC0003DMT400079651 Potato nucleus 42.26 46.53
Solyc06g035430.2.1 Tomato nucleus 40.94 45.09
GSMUA_Achr1P03070_001 Banana cytosol, extracellular, nucleus 23.1 44.9
GSMUA_Achr7P20540_001 Banana nucleus 34.38 44.71
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 39.37 44.64
GSMUA_Achr5P20630_001 Banana nucleus, plasma membrane, plastid 38.32 43.84
GSMUA_Achr2P20250_001 Banana cytosol, peroxisome, plastid 39.9 41.42
GSMUA_Achr6P03420_001 Banana nucleus 39.11 41.39
GSMUA_Achr6P13410_001 Banana cytosol, nucleus, peroxisome 39.63 41.26
GSMUA_Achr3P03710_001 Banana nucleus 37.8 39.45
GSMUA_Achr8P11400_001 Banana nucleus 35.17 38.73
GSMUA_Achr11P... Banana nucleus 37.53 38.13
GSMUA_Achr4P27240_001 Banana cytosol, extracellular, nucleus, plastid 35.17 38.07
CDX94457 Canola nucleus 37.27 37.57
GSMUA_Achr9P12360_001 Banana extracellular, vacuole 39.9 37.35
GSMUA_Achr11P... Banana nucleus 36.22 37.2
Bra019174.1-P Field mustard nucleus 38.58 37.12
CDX92693 Canola nucleus 38.58 37.12
GSMUA_Achr2P09840_001 Banana nucleus 34.65 36.97
CDY49703 Canola nucleus 38.58 36.84
AT4G25320.1 Thale cress nucleus 38.85 36.63
CDX87241 Canola nucleus 37.53 36.57
Bra035899.1-P Field mustard nucleus 37.53 36.48
CDY16785 Canola nucleus 37.53 36.48
CDX89422 Canola nucleus 36.75 36.46
AT5G51590.1 Thale cress nucleus 39.9 36.28
GSMUA_Achr4P30000_001 Banana nucleus 30.97 36.2
Bra013886.1-P Field mustard nucleus 35.96 35.96
CDX86910 Canola nucleus 37.53 35.84
CDY00271 Canola nucleus 37.8 35.73
Bra010070.1-P Field mustard nucleus 37.8 35.73
Bra029164.1-P Field mustard nucleus 39.63 35.61
CDY38874 Canola nucleus 39.37 35.46
GSMUA_Achr5P23820_001 Banana cytosol, nucleus, plasma membrane 38.32 34.68
CDY32624 Canola nucleus 38.58 34.67
AT5G62260.3 Thale cress nucleus 36.75 34.65
CDY30710 Canola nucleus 35.96 34.16
Bra029271.1-P Field mustard cytosol, nucleus, peroxisome 35.96 34.16
CDY00488 Canola nucleus 38.32 34.03
Bra028265.1-P Field mustard nucleus 38.06 33.8
CDX91598 Canola nucleus 36.48 33.17
Bra022555.1-P Field mustard nucleus 36.48 33.17
CDY65097 Canola nucleus 36.48 33.17
CDX99902 Canola nucleus 38.06 33.03
GSMUA_Achr3P03040_001 Banana nucleus, peroxisome, plasma membrane 37.53 29.55
Protein Annotations
EnsemblPlants:GSMUA_Achr1P19840_001EnsemblPlants:GSMUA_Achr1T19840_001EnsemblPlantsGene:GSMUA_Achr1G19840_001Gene3D:3.30.1330.80GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:AT_hook_DNA-bd_motifInterPro:IPR005175InterPro:PPC_domPANTHER:PTHR31500
PANTHER:PTHR31500:SF15PFAM:PF03479PFscan:PS51742SEG:segSMART:SM00384SUPFAM:SSF117856
UniParc:UPI000296B97BUniProt:M0S1E2MapMan:35.1:::
Description
AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G19840_001]
Coordinates
chr1:-:14889572..14896728
Molecular Weight (calculated)
37998.4 Da
IEP (calculated)
9.406
GRAVY (calculated)
0.041
Length
381 amino acids
Sequence
(BLAST)
001: MEGREGAVPS PAAVEGSGSY RPPSSPLTAG LVREEKPASE IGGMAPAAVA ASASPAVVAA PPVAAPAGVV VGPAAAVPEV VAAAAVVGLV AAEPMKKKRG
101: RPRKYGPDGS LLRPLNPMPI SASVPAGVQY TSAAAVGAAM KRGRGRPVGL VSKTLQYGLE SEPLGEMVAC SAGANFTPHV INVAAGEDVT MKIISFSQQG
201: PRAICILSAN GVISNVTLRQ PDSSGGTLTY EGRFELLSLS GSFMPTENGG TRSRSGGLSV SLASPDGRVV GGGVAGLLVA ASPVQVVVGS FLPSFQMEQK
301: IKKPRIETGS ASTPASAAMP HSTTDMEEAF GGGQGLSSSV TGKPNPSTTS SFKVENWAPS LHPVPGSSNS TTDINIGLPG G
Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.