Factsheet for Bra029164.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra022555.1-P
Bra028265.1-P
Bra029164.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51590.1	Bra022555.1-P	AT5G51590.1	23335615
AT5G51590.1	Bra028265.1-P	AT5G51590.1	23335615
AT5G51590.1	Bra029164.1-P	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38874	Canola	nucleus	99.29	99.53
CDY32624	Canola	nucleus	96.93	96.93
Bra028265.1-P	Field mustard	nucleus	85.85	84.85
AT5G51590.1	Thale cress	nucleus	79.25	80.19
Bra022555.1-P	Field mustard	nucleus	76.65	77.57
Bra019174.1-P	Field mustard	nucleus	61.56	65.91
Bra013886.1-P	Field mustard	nucleus	56.6	62.99
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	38.92	47.01
KRH34345	Soybean	nucleus	36.08	46.36
KRG92455	Soybean	nucleus	35.85	46.06
Solyc03g007150.2.1	Tomato	nucleus	34.43	44.92
Bra035899.1-P	Field mustard	nucleus	41.27	44.64
Bra010070.1-P	Field mustard	nucleus	42.22	44.42
PGSC0003DMT400071865	Potato	plastid	31.84	43.83
KRH09229	Soybean	nucleus	34.91	43.02
KRH38723	Soybean	nucleus	34.67	42.73
Bra037321.1-P	Field mustard	nucleus	31.6	42.41
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	40.09	42.39
Bra022946.1-P	Field mustard	nucleus	26.18	42.37
PGSC0003DMT400079651	Potato	nucleus	33.73	41.33
Solyc06g035430.2.1	Tomato	nucleus	33.02	40.46
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	31.84	40.18
GSMUA_Achr1P19840_001	Banana	nucleus	35.61	39.63
Bra019359.1-P	Field mustard	nucleus	30.66	39.51
Bra013646.1-P	Field mustard	nucleus	28.3	39.34
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	34.43	38.22
Bra033121.1-P	Field mustard	nucleus	27.12	37.1
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	33.25	36.15
Os08t0118000-01	Rice	nucleus	31.13	35.48
Bra021865.1-P	Field mustard	nucleus	28.3	34.29
TraesCS7B01G215600.1	Wheat	plastid	31.37	33.76
HORVU7Hr1G075040.1	Barley	plastid	31.13	33.59
KXG24283	Sorghum	plastid	30.9	33.33
TraesCS7D01G312100.1	Wheat	plastid	31.13	33.25
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	30.66	33.25
TraesCS7A01G315100.1	Wheat	plastid	31.13	33.17
Bra025511.1-P	Field mustard	nucleus	20.75	31.77
Bra039309.1-P	Field mustard	nucleus	25.47	31.67
Bra007595.1-P	Field mustard	nucleus	25.47	31.67
Bra014444.1-P	Field mustard	nucleus	24.76	31.53
Bra027642.1-P	Field mustard	nucleus	26.89	29.92
Bra027801.1-P	Field mustard	nucleus	25.94	29.33
Bra003446.1-P	Field mustard	nucleus	22.88	28.61
Bra025716.1-P	Field mustard	nucleus	17.22	27.14
Bra025717.1-P	Field mustard	nucleus	19.1	26.73
Bra040133.1-P	Field mustard	nucleus	23.82	26.37
Bra009999.1-P	Field mustard	nucleus	23.11	26.34
Bra020612.1-P	Field mustard	nucleus	21.7	26.14
Bra017536.1-P	Field mustard	nucleus	21.46	25.78
Bra021027.1-P	Field mustard	nucleus	24.76	25.61
Bra025718.1-P	Field mustard	nucleus, plastid	17.69	24.67
Bra013270.1-P	Field mustard	nucleus	24.76	24.65

Protein Annotations

EnsemblPlants:Bra029164.1	EnsemblPlants:Bra029164.1-P	EnsemblPlantsGene:Bra029164	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI00025400F0	UniProt:M4EK47	MapMan:35.1	:	:	:

Description

AT5G51590 (E=2e-122) | DNA-binding protein-related

Coordinates

chrA03:+:6657405..6659182

Molecular Weight (calculated)

44609.9 Da

IEP (calculated)

5.482

GRAVY (calculated)

-0.575

Length

424 amino acids

Sequence
(BLAST)

001: MEEREGTSNM ITSFGLKQHV APPPPPSGGG VYQMDPPRSE NPNPFPAGLP NTTAAAASAS AVAAKATENA APPFSLTMPV ENSSAELAKK KRGRPRKYNP
101: DGSLAVTLSP MPLSSSVPLS TGFASQKRGR GRGRGRGRGR GRVEQPPNNN SWVKNPQMFE FQNSSPVVGA ADVVTSASFT PHVLTVNAGE DVTMKIMTFS
201: QQEGSRAICI LSANGPISNV TLRQSTTSGG TLTYEGHFEI LSLTGSFIPS ESGGTRSRAG GMSVSLAGPD GRVFGGGLAG LFIAAGPVQV MVGTFVAGGQ
301: EETQQQQQQM KKQRGERFGI PTTTQASNIS FGGGSAEDPK ARYNGPNKPV VIQPPPVSAP PMSFQHEQST NAAQGYYRNN TADHIRDLFS SLPGEDDEED
401: EENLEGEDGE DFGVHTESDT EVPS

Best Arabidopsis Sequence Match ( AT5G51590.1 )
(BLAST)

001: MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM
101: PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ
201: QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES
301: QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE
401: GEDDEEFGGH SESDTEVPS

Arabidopsis Description

AHL4AT-hook motif nuclear-localized protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.