Factsheet for Bra021027.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003446.1-P
Bra006876.1-P
Bra007595.1-P
Bra012837.1-P
Bra014444.1-P
Bra027642.1-P
Bra027801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Bra027642.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra027801.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra006876.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra012837.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra003446.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra007595.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra014444.1-P	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76549	Canola	nucleus	98.54	91.82
CDY08882	Canola	nucleus	97.32	91.72
AT4G17950.1	Thale cress	nucleus	77.32	72.21
Bra013270.1-P	Field mustard	nucleus	66.34	63.85
Bra025716.1-P	Field mustard	nucleus	38.05	57.99
Bra017536.1-P	Field mustard	nucleus	48.54	56.37
Bra025717.1-P	Field mustard	nucleus	39.76	53.8
Bra025718.1-P	Field mustard	nucleus, plastid	38.29	51.64
Bra022946.1-P	Field mustard	nucleus	29.51	46.18
VIT_02s0012g00900.t01	Wine grape	nucleus	39.27	45.61
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	20.98	45.26
Os10t0572900-02	Rice	nucleus	27.32	44.62
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	30.98	41.37
KRH58200	Soybean	nucleus	36.34	41.16
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	34.15	39.77
KRH28286	Soybean	plastid	32.68	39.53
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	18.05	39.15
Solyc04g053090.1.1	Tomato	plastid	16.1	39.05
KRH04337	Soybean	nucleus	33.9	39.04
OQU82226	Sorghum	plastid	32.93	38.9
Os04t0589900-01	Rice	nucleus	34.63	37.47
KRH77206	Soybean	nucleus	30.73	37.28
GSMUA_Achr2P09840_001	Banana	nucleus	32.2	36.97
PGSC0003DMT400052826	Potato	nucleus	32.44	36.94
Solyc04g053100.1.1	Tomato	plastid	14.88	36.75
Bra021865.1-P	Field mustard	nucleus	29.76	34.86
Bra007595.1-P	Field mustard	nucleus	28.29	34.02
Bra025511.1-P	Field mustard	nucleus	22.93	33.94
Zm00001d026036_P001	Maize	nucleus	33.17	33.83
Bra014444.1-P	Field mustard	nucleus	27.32	33.63
Bra037321.1-P	Field mustard	nucleus	25.61	33.23
Bra039309.1-P	Field mustard	nucleus	27.56	33.14
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	32.93	32.77
TraesCS2A01G449500.1	Wheat	plastid	32.68	32.68
Zm00001d030053_P003	Maize	plastid	33.17	32.61
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	32.44	32.28
Bra033121.1-P	Field mustard	nucleus	24.39	32.26
KXG38867	Sorghum	plastid	32.93	31.91
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	32.93	31.47
Bra013646.1-P	Field mustard	nucleus	23.17	31.15
Bra027642.1-P	Field mustard	nucleus	28.54	30.71
Bra027801.1-P	Field mustard	nucleus	28.05	30.67
Bra019359.1-P	Field mustard	nucleus	24.15	30.09
TraesCS1B01G206100.2	Wheat	nucleus	32.68	29.71
TraesCS1D01G194900.2	Wheat	nucleus	32.68	29.52
TraesCS1A01G190900.1	Wheat	nucleus	32.68	29.52
Bra003446.1-P	Field mustard	nucleus	24.39	29.5
Solyc08g006950.2.1	Tomato	nucleus	28.05	29.41
HORVU1Hr1G049980.12	Barley	nucleus	32.68	28.88
Bra035899.1-P	Field mustard	nucleus	25.12	26.28
Bra040133.1-P	Field mustard	nucleus	23.9	25.59
Bra019174.1-P	Field mustard	nucleus	24.63	25.51
Bra010070.1-P	Field mustard	nucleus	24.88	25.31
Bra013886.1-P	Field mustard	nucleus	23.17	24.93
Bra029164.1-P	Field mustard	nucleus	25.61	24.76
Bra009999.1-P	Field mustard	nucleus	22.2	24.46
Bra020612.1-P	Field mustard	nucleus	20.98	24.43
Bra028265.1-P	Field mustard	nucleus	25.37	24.24
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	23.17	23.69
Bra022555.1-P	Field mustard	nucleus	24.15	23.63

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:Bra021027	EnsemblPlants:Bra021027.1	EnsemblPlants:Bra021027.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	UniProt:M4DWY1
PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF44	SMART:SM00384
SUPFAM:SSF117856	UniParc:UPI000254727E	SEG:seg	:	:	:

Description

AT4G17950 (E=4e-090) | DNA-binding family protein

Coordinates

chrA08:-:10395913..10397488

Molecular Weight (calculated)

42313.3 Da

IEP (calculated)

10.104

GRAVY (calculated)

-0.728

Length

410 amino acids

Sequence
(BLAST)

001: MGSYNRNPNA AAAAAALMGP TSTSQAMHHR LPFGSLAPHQ PQHHQQQQQQ LHPHQHHQPQ PQHQMDQKTL ESLGFEGSPS SVAAQQQQQP MRFGIEPQAK
101: KKRGRPRKYA ADGNIGLALA PTSPASNSYG GGAEGGGGGG GGDSGGGGNA NSSDLPAKRN RGRPPGSGKK QLDALGGTGG VGFTPHVIEV KTGEDIAMKV
201: VAFTQQGPRA ICILSATGAV STVMLRQANN PNGAVKFEGP YEIISMSGSF LNTESNGTVT KTGSLSVSLA RPDGQVVGGC VAGMLVAGSQ VQVVVGSFVA
301: DGKKQKQSAG RVQNTPEPAS APANMLTFGG SGGGGGGGGG GQGSPRSQGQ QHSSESSEEN ESNSPLHRGN NNNNNHHGLF GNSTPQQLHQ MPPMQQQMYH
401: HHLWPGHNPQ

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.