CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00715
KRH05193
KRH27929
KRH40471
KRH41165
KRH48165
KRH49429
KRH59866
KRH65066
KRH65641
KRH75994
KRH77536

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	KRH05193	AT1G63470.1	21798944
AT4G17950.1	KRH27929	AT1G63470.1	21798944
AT4G17950.1	KRH41165	AT1G63470.1	21798944
AT4G17950.1	KRH59866	AT1G63470.1	21798944
AT4G17950.1	KRH77536	AT1G63470.1	21798944
AT4G17950.1	KRH49429	AT3G51780.1	21798944
AT4G17950.1	KRH65641	AT3G51780.1	21798944
AT4G17950.1	KRH75994	AT3G51780.1	21798944
AT4G17950.1	KRH00715	AT3G61310.1	21798944
AT4G17950.1	KRH40471	AT3G61310.1	21798944
AT4G17950.1	KRH48165	AT3G61310.1	21798944
AT4G17950.1	KRH65066	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28286	Soybean	plastid	88.46	88.2
KRH04337	Soybean	nucleus	60.35	57.3
KRH58200	Soybean	nucleus	60.95	56.91
VIT_02s0012g00900.t01	Wine grape	nucleus	52.66	50.42
Os10t0572900-02	Rice	nucleus	31.66	42.63
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	22.78	40.53
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	39.94	38.35
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	34.32	37.78
Solyc04g053090.1.1	Tomato	plastid	18.64	37.28
Os04t0589900-01	Rice	nucleus	41.12	36.68
GSMUA_Achr2P09840_001	Banana	nucleus	37.87	35.85
OQU82226	Sorghum	plastid	35.8	34.87
CDY01503	Canola	cytosol	26.63	34.75
AT5G46640.1	Thale cress	nucleus	39.35	34.46
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	18.93	33.86
Solyc04g053100.1.1	Tomato	plastid	16.57	33.73
KRH05193	Soybean	plastid	14.5	33.33
PGSC0003DMT400052826	Potato	nucleus	35.21	33.06
CDX78814	Canola	nucleus	39.65	32.92
KRH48165	Soybean	nucleus	32.25	32.06
AT4G17950.1	Thale cress	nucleus	41.42	31.89
Zm00001d026036_P001	Maize	nucleus	37.57	31.59
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.46	31.55
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	38.46	31.55
KRH65066	Soybean	nucleus	31.66	31.47
TraesCS2A01G449500.1	Wheat	plastid	38.17	31.46
Bra025716.1-P	Field mustard	nucleus	24.85	31.23
CDY35172	Canola	nucleus	32.54	31.16
Bra017536.1-P	Field mustard	nucleus	32.54	31.16
CDY26693	Canola	plastid	24.85	31.11
CDY03203	Canola	nucleus	32.84	31.01
KRH60876	Soybean	nucleus	32.54	30.81
CDY08882	Canola	nucleus	39.65	30.8
Bra021027.1-P	Field mustard	nucleus	37.28	30.73
CDY44500	Canola	nucleus	38.17	30.71
Zm00001d030053_P003	Maize	plastid	37.87	30.7
Bra025717.1-P	Field mustard	nucleus	27.51	30.69
CDY26692	Canola	nucleus	27.51	30.69
KRH76268	Soybean	cytosol, nucleus, plastid	31.36	30.64
CDY41027	Canola	cytosol	23.96	30.45
KRH51558	Soybean	nucleus	31.95	30.42
KRH40594	Soybean	nucleus	30.18	30.27
KXG38867	Sorghum	plastid	37.87	30.26
CDY41028	Canola	nucleus, plastid	22.19	30.24
CDX76549	Canola	nucleus	39.35	30.23
KRH40471	Soybean	nucleus	30.47	30.21
KRH00569	Soybean	cytosol, peroxisome, plastid	30.18	30.18
CDY26694	Canola	cytosol, plastid	23.37	30.15
KRH00715	Soybean	nucleus	30.47	30.12
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	38.17	30.07
KRH65263	Soybean	cytosol, nucleus, plastid	30.77	30.06
KRH34345	Soybean	nucleus	28.7	29.39
CDY68252	Canola	nucleus	25.74	29.29
KRG92455	Soybean	nucleus	28.4	29.09
TraesCS1B01G206100.2	Wheat	nucleus	38.46	28.82
KRH57315	Soybean	nucleus	27.81	28.75
TraesCS1D01G194900.2	Wheat	nucleus	38.46	28.63
TraesCS1A01G190900.1	Wheat	nucleus	38.46	28.63
KRH04046	Soybean	nucleus	27.81	28.4
Solyc08g006950.2.1	Tomato	nucleus	32.54	28.13
HORVU1Hr1G049980.12	Barley	nucleus	38.46	28.02
CDY26691	Canola	cytosol, plastid	25.74	27.97
Bra025718.1-P	Field mustard	nucleus, plastid	25.15	27.96
Bra013270.1-P	Field mustard	nucleus	34.91	27.7
KRH20019	Soybean	nucleus	30.77	27.44
KRH09229	Soybean	nucleus	27.81	27.33
KRH38723	Soybean	nucleus	27.81	27.33
CDY01506	Canola	nucleus	24.26	27.24
KRH59866	Soybean	nucleus	28.11	26.99
KRH41165	Soybean	nucleus	28.11	26.99
KRH27929	Soybean	nucleus	27.51	26.42
KRH68809	Soybean	nucleus	26.63	26.01
KRH32644	Soybean	plastid	29.59	25.25
KRH77536	Soybean	nucleus	26.63	25.21
KRG97062	Soybean	nucleus	26.92	25.21
KRH25156	Soybean	cytosol	18.34	23.85
KRH30520	Soybean	nucleus	23.67	21.62

Protein Annotations

EntrezGene:100788026	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02000662	InterPro:AT_hook_DNA-bd_motif	EnsemblPlantsGene:GLYMA_01G198900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	UniProt:I1J9J6	InterPro:IPR005175
EnsemblPlants:KRH77206	ProteinID:KRH77206	ProteinID:KRH77206.1	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31500	PANTHER:PTHR31500:SF17	SMART:SM00384	SUPFAM:SSF117856	UniParc:UPI00023372E4	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:53282749..53286780

Molecular Weight (calculated)

35210.2 Da

IEP (calculated)

9.376

GRAVY (calculated)

-0.532

Length

338 amino acids

Sequence
(BLAST)

001: MDSREQPQPQ PPNMMVGPTV YPSMLAPATA RFPYSNNNNN NSNPPPPSSE PLNSDANTNH NNSTFEALKP CALAASESSK KKRGRPRKYS PDGNIALGLG
101: PTHAPASSAD PPAKKHRGRP PGSGKKQMDA LGIPGTGFTP HVITAEVGED IASKLVAFCE QGRRTVCTLS ASGAIRNVTI RAPDMPAGIL AYEGQFEIIS
201: LKAATLQSDN NRMAALSVSI AGPDGRLLGG EVVGALTAAT AVQVILGSFI ADGKKSSSSN LKSGRSSTPS SQMLAFGASP TPTTPTSLGP STDSSEDNEN
301: SHFSKGPGGS GLYNNNASQP IHTMPMYQHQ LWAGHTQQ

Best Arabidopsis Sequence Match ( AT5G46640.1 )
(BLAST)

001: MDSRDIPPSH NQLQPPPGML MSHYRNPNAA ASPLMVPTST SQPIQHPRLP FGNQQQSQTF HQQQQQQMDQ KTLESLGFGD GSPSSQPMRF GIDDQNQQLQ
101: VKKKRGRPRK YTPDGSIALG LAPTSPLLSA ASNSYGEGGV GDSGGNGNSV DPPVKRNRGR PPGSSKKQLD ALGGTSGVGF TPHVIEVNTG EDIASKVMAF
201: SDQGSRTICI LSASGAVSRV MLRQASHSSG IVTYEGRFEI ITLSGSVLNY EVNGSTNRSG NLSVALAGPD GGIVGGSVVG NLVAATQVQV IVGSFVAEAK
301: KPKQSSVNIA RGQNPEPASA PANMLNFGSV SQGPSSESSE ENESGSPAMH RDNNNGIYGA QQQQQQQPLH PHQMQMYQHL WSNHGQ

Arabidopsis Description

AHL8AT-hook motif nuclear-localized protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.