CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00715
KRH04046
KRH04337
KRH28286
KRH40471
KRH48165
KRH57315
KRH58200
KRH65066
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45850.1	KRH04046	AT4G12080.1	21798944
AT2G45850.1	KRH57315	AT4G12080.1	21798944
AT2G45850.1	KRH04337	AT4G17950.1	21798944
AT2G45850.1	KRH28286	AT4G17950.1	21798944
AT2G45850.1	KRH58200	AT4G17950.1	21798944
AT2G45850.1	KRH77206	AT4G17950.1	21798944
AT3G61310.1	KRH00715	AT2G45850.1	21798944
AT3G61310.1	KRH40471	AT2G45850.1	21798944
AT3G61310.1	KRH48165	AT2G45850.1	21798944
AT3G61310.1	KRH65066	AT2G45850.1	21798944
AT3G61310.1	KRH00715	AT3G61310.1	21798944
AT3G61310.1	KRH40471	AT3G61310.1	21798944
AT3G61310.1	KRH48165	AT3G61310.1	21798944
AT3G61310.1	KRH65066	AT3G61310.1	21798944
AT3G61310.1	KRH04046	AT4G12080.1	21798944
AT3G61310.1	KRH57315	AT4G12080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00715	Soybean	nucleus	96.19	95.91
KRH48165	Soybean	nucleus	84.16	84.41
KRH65066	Soybean	nucleus	83.58	83.82
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	72.14	71.3
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	61.29	62.76
PGSC0003DMT400000467	Potato	nucleus	60.7	61.06
Solyc01g094460.2.1	Tomato	nucleus	60.12	60.47
GSMUA_Achr11P...	Banana	nucleus	60.41	55.53
GSMUA_Achr8P11400_001	Banana	nucleus	55.43	54.62
Bra039309.1-P	Field mustard	nucleus	53.96	53.96
CDY37070	Canola	nucleus	53.96	53.96
CDY27354	Canola	nucleus	54.84	53.58
AT2G45850.1	Thale cress	nucleus	54.55	53.45
GSMUA_Achr11P...	Banana	nucleus	58.65	53.33
KRH05193	Soybean	plastid	22.87	53.06
CDY42495	Canola	nucleus	52.2	52.66
Bra007595.1-P	Field mustard	nucleus	52.49	52.49
CDY48928	Canola	nucleus	52.79	52.33
AT3G61310.1	Thale cress	nucleus, plastid	53.96	51.98
Bra014444.1-P	Field mustard	nucleus	50.73	51.95
CDX89109	Canola	nucleus	50.73	51.64
CDX71746	Canola	nucleus	51.61	51.16
CDY58791	Canola	nucleus	48.68	50.61
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	29.03	50.51
CDY51561	Canola	nucleus	49.27	49.41
KRH77536	Soybean	nucleus	50.15	47.9
KRH27929	Soybean	nucleus	49.27	47.73
Bra003446.1-P	Field mustard	nucleus	47.21	47.49
KRH59866	Soybean	nucleus	48.09	46.59
KRH41165	Soybean	nucleus	47.21	45.74
GSMUA_Achr4P30000_001	Banana	nucleus	43.11	45.09
HORVU2Hr1G123730.3	Barley	plastid	26.1	42.38
Zm00001d018515_P002	Maize	nucleus	47.21	41.49
TraesCS7A01G565900.1	Wheat	nucleus	37.24	41.37
KRH57315	Soybean	nucleus	39.3	40.98
KRH04046	Soybean	nucleus	39.59	40.79
OQU85994	Sorghum	nucleus	46.63	39.65
KRH76268	Soybean	cytosol, nucleus, plastid	40.18	39.6
Os02t0824300-01	Rice	nucleus	45.45	39.34
KRH65263	Soybean	cytosol, nucleus, plastid	39.59	39.02
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	45.75	39.0
KRH00569	Soybean	cytosol, peroxisome, plastid	36.95	37.28
KRH34345	Soybean	nucleus	36.07	37.27
KRG92455	Soybean	nucleus	35.48	36.67
KRH40594	Soybean	nucleus	36.07	36.5
KRH51558	Soybean	nucleus	36.36	34.93
KRH58200	Soybean	nucleus	36.95	34.81
KRH09229	Soybean	nucleus	34.9	34.59
KRH38723	Soybean	nucleus	34.02	33.72
KRH04337	Soybean	nucleus	35.19	33.71
KRH20019	Soybean	nucleus	37.24	33.51
Zm00001d026652_P001	Maize	plastid	39.0	33.5
KRH60876	Soybean	nucleus	34.9	33.33
TraesCS2A01G582300.1	Wheat	nucleus	39.3	33.17
KRH68809	Soybean	nucleus	33.43	32.95
TraesCS2B01G604700.1	Wheat	nucleus	38.12	32.26
KRG97062	Soybean	nucleus	34.02	32.13
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	38.12	32.1
TraesCS6B01G447600.1	Wheat	nucleus	44.28	32.06
KXG27470	Sorghum	nucleus	39.3	32.06
KRH28286	Soybean	plastid	31.67	31.86
Os04t0683900-01	Rice	nucleus	38.42	31.26
KRH32644	Soybean	plastid	36.07	31.06
KRH77206	Soybean	nucleus	30.21	30.47
TraesCS6A01G403700.1	Wheat	nucleus	45.45	29.19
Zm00001d001784_P002	Maize	nucleus	36.95	28.97
HORVU7Hr1G122340.3	Barley	nucleus	29.62	28.94
KRH25156	Soybean	cytosol	20.82	27.31
KRH30520	Soybean	nucleus	27.27	25.14

Protein Annotations

EntrezGene:100814615	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02006038	InterPro:AT_hook_DNA-bd_motif	EMBL:BT094072
UniProt:C6T9A7	EnsemblPlantsGene:GLYMA_09G260600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:IPR005175	EnsemblPlants:KRH40471	ProteinID:KRH40471	ProteinID:KRH40471.1	ProteinID:KRH40472.1	PFAM:PF03479
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500	PANTHER:PTHR31500:SF44	SMART:SM00384	SUPFAM:SSF117856
UniParc:UPI0001B165A5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:47883103..47890311

Molecular Weight (calculated)

35157.7 Da

IEP (calculated)

10.417

GRAVY (calculated)

-0.347

Length

341 amino acids

Sequence
(BLAST)

001: MDRGDQMALS GSYYMQQRGI PGSGGQPELH ISPNMRPLSN PNLPFQSSIG GGTIGSTLPL ESSAISAHGV NVGAPTGAPL GEPVKRKRGR PRKYGTDGSV
101: SLALTPTPTS SSHPGALSQS QKRGRGRPPG TGKKQQLASL GELMSGSAGM GFTPHIINIA SGEDIATKIM AFSQQGPRVV CILSANGAVS TVTLRQPSTS
201: GGTVTYEGRF EIVCLSGSYL VTENGGSRNR TGGLSVSLAS PDGRVIGGGV GGVLIASSPV QVVVGSFLWG GSKTKNKKKE SSEGAEVAVE SDHQGVHNPV
301: SLNSISQNQN LPPTPPSLSP WSTSRPLDMR NSHVDIDLMR G

Best Arabidopsis Sequence Match ( AT2G45850.3 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVWFTLFS

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.