Factsheet for GSMUA_Achr11P04000_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P03070_001
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr4P30000_001
GSMUA_Achr5P03370_001
GSMUA_Achr5P20630_001
GSMUA_Achr8P11400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT1G63480.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944
AT2G45850.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT2G45850.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT2G45850.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr11P...	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr1P03070_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr4P30000_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr5P20630_001	AT3G61310.1	21798944
AT3G61310.1	GSMUA_Achr8P11400_001	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20630_001	Banana	nucleus, plasma membrane, plastid	77.07	86.79
GSMUA_Achr8P11400_001	Banana	nucleus	76.8	83.24
GSMUA_Achr11P...	Banana	nucleus	78.13	78.98
VIT_15s0046g02930.t01	Wine grape	nucleus, plastid	59.2	64.35
KRH40471	Soybean	nucleus	53.33	58.65
KRH00715	Soybean	nucleus	53.33	58.48
KRH65066	Soybean	nucleus	52.53	57.94
KRH48165	Soybean	nucleus	52.27	57.65
GSMUA_Achr1P03070_001	Banana	cytosol, extracellular, nucleus	29.87	57.14
VIT_02s0025g03580.t01	Wine grape	nucleus	51.2	55.49
Solyc01g094460.2.1	Tomato	nucleus	48.53	53.69
PGSC0003DMT400000467	Potato	nucleus	48.53	53.69
KRH05193	Soybean	plastid	20.53	52.38
CDY37070	Canola	nucleus	45.07	49.56
Bra039309.1-P	Field mustard	nucleus	44.8	49.27
AT2G45850.1	Thale cress	nucleus	45.33	48.85
CDY27354	Canola	nucleus	45.07	48.42
KRH27929	Soybean	nucleus	45.07	48.01
Solyc08g080960.2.1	Tomato	nucleus	42.67	47.9
GSMUA_Achr4P30000_001	Banana	nucleus	41.07	47.24
AT3G61310.1	Thale cress	nucleus, plastid	44.53	47.18
KRH77536	Soybean	nucleus	44.8	47.06
KRH59866	Soybean	nucleus	44.0	46.88
Bra014444.1-P	Field mustard	nucleus	41.6	46.85
GSMUA_Achr7P20540_001	Banana	nucleus	36.53	46.76
CDY42495	Canola	nucleus	41.87	46.45
CDY58791	Canola	nucleus	40.27	46.04
KRH41165	Soybean	nucleus	43.2	46.02
CDX89109	Canola	nucleus	41.07	45.97
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	23.2	45.79
Bra007595.1-P	Field mustard	nucleus	41.6	45.75
CDY51561	Canola	nucleus	40.8	45.0
PGSC0003DMT400014926	Potato	plastid	41.33	44.93
CDY25500	Canola	nucleus	44.27	44.86
Solyc08g008030.2.1	Tomato	nucleus	41.33	44.8
CDY48928	Canola	nucleus	41.07	44.77
CDY64088	Canola	nucleus, plasma membrane, plastid	43.2	44.75
CDX71746	Canola	nucleus	40.53	44.19
Bra025511.1-P	Field mustard	nucleus	32.27	43.68
Bra027642.1-P	Field mustard	nucleus	44.27	43.57
Bra003446.1-P	Field mustard	nucleus	39.2	43.36
CDY45364	Canola	nucleus	42.4	43.32
CDY34355	Canola	nucleus	42.93	42.59
Bra027801.1-P	Field mustard	nucleus	42.4	42.4
AT1G63470.1	Thale cress	nucleus	42.67	42.33
PGSC0003DMT400031843	Potato	plastid	43.2	42.19
AT1G63480.1	Thale cress	nucleus	40.53	42.11
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	37.6	41.96
HORVU2Hr1G123730.3	Barley	plastid	22.67	40.48
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	36.0	40.18
GSMUA_Achr3P03710_001	Banana	nucleus	38.93	40.0
GSMUA_Achr6P13410_001	Banana	cytosol, nucleus, peroxisome	38.67	39.62
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	36.8	39.2
GSMUA_Achr2P20250_001	Banana	cytosol, peroxisome, plastid	38.13	38.96
GSMUA_Achr6P03420_001	Banana	nucleus	36.8	38.33
GSMUA_Achr1P19840_001	Banana	nucleus	38.13	37.53
CDY39751	Canola	nucleus	38.13	37.43
CDY46385	Canola	nucleus	37.6	36.91
GSMUA_Achr9P12360_001	Banana	extracellular, vacuole	39.47	36.36
GSMUA_Achr2P09840_001	Banana	nucleus	34.4	36.13
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	35.73	35.08
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	36.27	34.87
GSMUA_Achr5P23820_001	Banana	cytosol, nucleus, plasma membrane	36.8	32.78
Zm00001d026652_P001	Maize	plastid	34.4	32.49
TraesCS2B01G604700.1	Wheat	nucleus	33.6	31.27
KXG27470	Sorghum	nucleus	34.67	31.1
TraesCS2A01G582300.1	Wheat	nucleus	33.33	30.94
Os04t0683900-01	Rice	nucleus	34.4	30.79
TraesCS2D01G597900.1	Wheat	cytosol, nucleus, plasma membrane, plastid	32.8	30.37
Zm00001d001784_P002	Maize	nucleus	34.4	29.66
GSMUA_Achr3P03040_001	Banana	nucleus, peroxisome, plasma membrane	37.87	29.34

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT_hook_DNA-bd_motif	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr11G04000_001	EnsemblPlants:GSMUA_Achr11P04000_001
EnsemblPlants:GSMUA_Achr11T04000_001	InterPro:IPR005175	UniProt:M0RP80	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31500	PANTHER:PTHR31500:SF9	SMART:SM00384	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI000296286F
SEG:seg	:	:	:	:	:

Description

Putative AT hook motif domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G04000_001]

Coordinates

chr11:+:2910023..2913655

Molecular Weight (calculated)

38164.5 Da

IEP (calculated)

10.479

GRAVY (calculated)

-0.118

Length

375 amino acids

Sequence
(BLAST)

001: MDGRDAMAMS GPAYYIAHRG IPGSLAGSQP GLHAAAQPGV RSLPNPGTIL VVPSSGVGSA AFQVESPPAA SLHGGGGGGG LGEGASQTEP VKRKRGRPRK
101: YGPDGSVALA LSPISSSAPP SATVIGSETA SGAGAPTLKR GRGRPPGTGR KQQILITKTR FVDLKKLSFF FPFRLHGEWV VGSAGMGFTP HVITIAIGED
201: IAAKIMSFSQ QGPRAVCILS ANGAVSTVTL RQSATSGGTV TYEGRFEILC LSGSYMLTDN GNGSRSRTGG LSISLSSPDG RVIGGGVAGL LIAATPVQVI
301: VGSFIYAGSK ARSKQKASNE TGAQSSELQV GDEQSAPYAA IPDQNVTPSS VMGGWPGSRQ LDMRNAHIDI DLTRG

Best Arabidopsis Sequence Match ( AT2G45850.1 )
(BLAST)

001: MDRRDAMGLS GSGSYYIHRG LSGSGPPTFH GSPQQQQGLR HLPNQNSPFG SGSTGFGSPS LHGDPSLATA AGGAGALPHH IGVNMIAPPP PPSETPMKRK
101: RGRPRKYGQD GSVSLALSSS SVSTITPNNS NKRGRGRPPG SGKKQRMASV GELMPSSSGM SFTPHVIAVS IGEDIASKVI AFSQQGPRAI CVLSASGAVS
201: TATLIQPSAS PGAIKYEGRF EILALSTSYI VATDGSFRNR TGNLSVSLAS PDGRVIGGAI GGPLIAASPV QVIVGSFIWA APKIKSKKRE EEASEVVQET
301: DDHHVLDNNN NTISPVPQQQ PNQNLIWSTG SRQMDMRHAH ADIDLMRG

Arabidopsis Description

AHL9AT-hook motif nuclear-localized protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80834]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.