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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 2
  • peroxisome 1
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus, peroxisome, plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g094460.2.1
Solyc08g008030.2.1
Solyc08g080960.2.1
Solyc10g085290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17950.1 Solyc08g008030.2.1 AT1G63470.1 21798944
AT4G17950.1 Solyc08g080960.2.1 AT1G63470.1 21798944
AT4G17950.1 Solyc10g085290.1.1 AT3G51780.1 21798944
AT4G17950.1 Solyc01g094460.2.1 AT3G61310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g053100.1.1 Tomato plastid 90.53 92.17
HORVU7Hr1G065300.2 Barley mitochondrion, plastid 35.5 31.75
GSMUA_Achr5P03370_001 Banana mitochondrion, plastid 35.5 31.58
Os10t0572900-02 Rice nucleus 45.56 30.68
HORVU2Hr1G105800.13 Barley cytosol, vacuole 44.97 24.76
KRH58200 Soybean nucleus 48.52 22.65
OQU82226 Sorghum plastid 45.56 22.19
GSMUA_Achr4P27240_001 Banana cytosol, extracellular, nucleus, plastid 46.15 22.16
CDY41027 Canola cytosol 33.73 21.43
Solyc01g091370.2.1 Tomato nucleus 40.24 21.38
Os04t0589900-01 Rice nucleus 46.75 20.84
GSMUA_Achr2P09840_001 Banana nucleus 43.79 20.73
CDY26694 Canola cytosol, plastid 31.95 20.61
Solyc12g094710.1.1 Tomato nucleus 43.2 20.45
Solyc02g082300.2.1 Tomato nucleus, plastid 31.36 20.31
Solyc08g079630.2.1 Tomato nucleus 38.46 20.25
Solyc08g006950.2.1 Tomato nucleus 46.15 19.95
Bra025716.1-P Field mustard nucleus 31.36 19.7
CDY26693 Canola plastid 31.36 19.63
Solyc08g007530.2.1 Tomato nucleus 37.87 19.51
Solyc01g094460.2.1 Tomato nucleus 39.05 19.47
Zm00001d026036_P001 Maize nucleus 46.15 19.4
CDY01503 Canola cytosol 29.59 19.3
TraesCS2A01G449500.1 Wheat plastid 46.15 19.02
Solyc02g038760.2.1 Tomato nucleus 36.69 19.02
TraesCS2B01G470900.1 Wheat cytosol, nucleus, peroxisome, plastid 46.15 18.93
Solyc03g007150.2.1 Tomato nucleus 36.09 18.77
Zm00001d030053_P003 Maize plastid 46.15 18.7
TraesCS2D01G448900.1 Wheat cytosol, nucleus, peroxisome, plastid 45.56 18.69
KRH77206 Soybean nucleus 37.28 18.64
KXG38867 Sorghum plastid 46.15 18.44
KRH28286 Soybean plastid 36.69 18.29
CDY01506 Canola nucleus 32.54 18.27
KRH04337 Soybean nucleus 38.46 18.26
Zm00001d047042_P004 Maize cytosol, nucleus, plasma membrane 46.15 18.18
CDY68252 Canola nucleus 31.95 18.18
Solyc06g035430.2.1 Tomato nucleus 36.69 17.92
Solyc08g077030.2.1 Tomato nucleus 43.2 17.85
AT5G46640.1 Thale cress nucleus 40.24 17.62
CDY26692 Canola nucleus 31.36 17.49
Bra025717.1-P Field mustard nucleus 31.36 17.49
Bra025718.1-P Field mustard nucleus, plastid 31.36 17.43
Solyc08g008030.2.1 Tomato nucleus 35.5 17.34
TraesCS1B01G206100.2 Wheat nucleus 46.15 17.29
Bra017536.1-P Field mustard nucleus 36.09 17.28
CDY35172 Canola nucleus 36.09 17.28
Solyc12g019430.1.1 Tomato cytosol, plastid, vacuole 19.53 17.19
TraesCS1D01G194900.2 Wheat nucleus 46.15 17.18
TraesCS1A01G190900.1 Wheat nucleus 46.15 17.18
Solyc08g080960.2.1 Tomato nucleus 33.73 17.07
CDY26691 Canola cytosol, plastid 31.36 17.04
CDX78814 Canola nucleus 40.83 16.95
CDY41028 Canola nucleus, plastid 24.85 16.94
HORVU1Hr1G049980.12 Barley nucleus 46.15 16.81
CDY03203 Canola nucleus 35.5 16.76
CDY44500 Canola nucleus 40.83 16.43
Bra021027.1-P Field mustard nucleus 39.05 16.1
Bra013270.1-P Field mustard nucleus 40.24 15.96
AT4G17950.1 Thale cress nucleus 41.42 15.95
CDY08882 Canola nucleus 40.83 15.86
CDX76549 Canola nucleus 40.83 15.68
Solyc11g006190.1.1 Tomato nucleus 30.77 15.43
Solyc09g008940.2.1 Tomato nucleus 35.5 14.39
Protein Annotations
EnsemblPlants:Solyc04g053090.1.1EnsemblPlantsGene:Solyc04g053090.1Gene3D:3.30.1330.80InterPro:IPR005175InterPro:PPC_domPANTHER:PTHR31500
PANTHER:PTHR31500:SF17PFAM:PF03479PFscan:PS51742SEG:segSUPFAM:SSF117856UniParc:UPI0002767384
UniProt:K4BSG6MapMan:35.1::::
Description
No Description!
Coordinates
chr4:+:51514591..51516231
Molecular Weight (calculated)
17507.3 Da
IEP (calculated)
7.343
GRAVY (calculated)
0.143
Length
169 amino acids
Sequence
(BLAST)
001: MDSQKTSVGA KIVQTSSNHG ELFGVVGKAQ VILVKTGEDI VSKIMNLSQQ GPMKICVHSA TGGICNVTLQ ESATGGGIVT YEGQFFIISL SGSVMLSKSS
101: RTCDLSVMLS RSDHIVLGGC VAGKLIAATP VQVVLSSFIP EKEKPESKGD DDAPKGIRIV DPPGSCVGN
Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)
001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K
Arabidopsis Description
AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.