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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • plasma membrane 1
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g007150.2.1 nucleus
Solyc06g035430.2.1 nucleus
Solyc08g007530.2.1
Solyc08g079630.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25320.1 Solyc08g007530.2.1 AT4G12080.1 21798944
AT4G25320.1 Solyc08g079630.2.1 AT4G12080.1 21798944
AT4G25320.1 Solyc03g007150.2.1 AT4G25320.1 23335615
AT4G25320.1 Solyc06g035430.2.1 AT4G25320.1 23335615
AT4G25320.1 Solyc03g007150.2.1 AT5G51590.1 23335615
AT4G25320.1 Solyc06g035430.2.1 AT5G51590.1 23335615
AT4G25320.1 Solyc03g007150.2.1 AT5G51590.1 23335615
AT4G25320.1 Solyc06g035430.2.1 AT5G51590.1 23335615
AT5G51590.1 Solyc03g007150.2.1 AT5G51590.1 23335615
AT5G51590.1 Solyc06g035430.2.1 AT5G51590.1 23335615
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079651 Potato nucleus 93.85 88.15
Solyc06g035430.2.1 Tomato nucleus 67.69 63.58
KRG92455 Soybean nucleus 62.46 61.52
KRH34345 Soybean nucleus 62.46 61.52
VIT_16s0022g01810.t01 Wine grape cytosol, nucleus, peroxisome 64.31 59.54
KRH09229 Soybean nucleus 59.38 56.1
KRH38723 Soybean nucleus 58.46 55.23
Solyc08g007530.2.1 Tomato nucleus 52.92 52.44
Solyc08g079630.2.1 Tomato nucleus 49.85 50.47
Solyc01g091370.2.1 Tomato nucleus 45.54 46.54
GSMUA_Achr7P06500_001 Banana cytosol, plasma membrane, plastid 47.08 45.54
GSMUA_Achr1P19840_001 Banana nucleus 50.46 43.04
Os08t0118000-01 Rice nucleus 46.15 40.32
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 47.38 40.31
GSMUA_Achr2P03170_001 Banana cytosol, peroxisome, plasma membrane 47.08 39.23
CDX94457 Canola nucleus 44.0 37.83
TraesCS7B01G215600.1 Wheat plastid 45.54 37.56
Zm00001d049661_P001 Maize cytosol, peroxisome, plasma membrane 44.92 37.34
Bra019174.1-P Field mustard nucleus 45.23 37.12
TraesCS7D01G312100.1 Wheat plastid 45.23 37.03
KXG24283 Sorghum plastid 44.62 36.9
HORVU7Hr1G075040.1 Barley plastid 44.62 36.9
CDX92693 Canola nucleus 44.92 36.87
CDY49703 Canola nucleus 45.23 36.84
Bra013886.1-P Field mustard nucleus 43.08 36.75
CDX89422 Canola nucleus 43.38 36.72
TraesCS7A01G315100.1 Wheat plastid 44.92 36.68
AT4G25320.1 Thale cress nucleus 45.23 36.39
Solyc04g053090.1.1 Tomato plastid 18.77 36.09
AT5G51590.1 Thale cress nucleus 45.23 35.08
Solyc04g053100.1.1 Tomato plastid 17.85 34.94
CDX87241 Canola nucleus 41.85 34.78
CDY38874 Canola nucleus 44.92 34.52
Bra035899.1-P Field mustard nucleus 41.54 34.44
CDY16785 Canola nucleus 41.54 34.44
Bra029164.1-P Field mustard nucleus 44.92 34.43
CDY00271 Canola nucleus 42.15 33.99
Bra010070.1-P Field mustard nucleus 42.15 33.99
CDY32624 Canola nucleus 44.31 33.96
AT5G62260.3 Thale cress nucleus 42.15 33.91
CDX86910 Canola nucleus 41.54 33.83
CDY00488 Canola nucleus 44.62 33.8
Bra028265.1-P Field mustard nucleus 44.31 33.57
Solyc08g008030.2.1 Tomato nucleus 35.69 33.53
Solyc12g094710.1.1 Tomato nucleus 36.62 33.33
Solyc01g094460.2.1 Tomato nucleus 34.46 33.04
CDX91598 Canola nucleus 42.46 32.94
Solyc08g080960.2.1 Tomato nucleus 33.85 32.93
CDY30710 Canola nucleus 40.31 32.67
CDX99902 Canola nucleus 44.0 32.57
Bra022555.1-P Field mustard nucleus 41.85 32.46
Bra029271.1-P Field mustard cytosol, nucleus, peroxisome 40.0 32.42
CDY65097 Canola nucleus 41.54 32.22
Solyc02g082300.2.1 Tomato nucleus, plastid 25.23 31.42
Solyc02g038760.2.1 Tomato nucleus 31.38 31.29
Solyc09g008940.2.1 Tomato nucleus 37.85 29.5
Solyc11g006190.1.1 Tomato nucleus 29.54 28.49
Solyc08g077030.2.1 Tomato nucleus 35.38 28.12
Solyc08g006950.2.1 Tomato nucleus 30.15 25.06
Solyc12g019430.1.1 Tomato cytosol, plastid, vacuole 14.77 25.0
Protein Annotations
EnsemblPlants:Solyc03g007150.2.1EnsemblPlantsGene:Solyc03g007150.2Gene3D:3.30.1330.80InterPro:IPR005175InterPro:PPC_domPANTHER:PTHR31500
PANTHER:PTHR31500:SF18PFAM:PF03479PFscan:PS51742SEG:segSUPFAM:SSF117856UniParc:UPI0002767F65
UniProt:K4BED8MapMan:35.1::::
Description
No Description!
Coordinates
chr3:+:1735261..1741098
Molecular Weight (calculated)
33703.8 Da
IEP (calculated)
9.763
GRAVY (calculated)
-0.298
Length
325 amino acids
Sequence
(BLAST)
001: MEEKEGVNGS GVTVKGDEAP ESYRVAPRSE SNNIEFSGSI VATTPVNVTE ETKKKRGRPR KYGPDGKPAV ALSPMPISAS IPLAGDFSAW KNSGSRPVDS
101: FKKKNKFEVG APGEGMAYSV GASANFTPHV ITVNAGEDVN MKIISFAQQG SRAICVLAAN GAISNVTLRQ PNSSGGTLTY EGHFEILSLT GSFMPSDNGV
201: TKSRSGGMSV SLSGPDGRVM GGGLAGMLVA AGPIQIVVGS FLPGQQLEQK PKKQRVERAA IPAPPISEER TDVASSGTSP RVAASISFPG DNLITSNSIY
301: SSRISASQNN ISLPGTVSKE QSLSS
Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)
001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT
Arabidopsis Description
AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.