Factsheet for PGSC0003DMT400079651

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010017
PGSC0003DMT400032575
PGSC0003DMT400071865	nucleus
PGSC0003DMT400079651	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25320.1	PGSC0003DMT400010017	AT4G12080.1	21798944
AT4G25320.1	PGSC0003DMT400032575	AT4G12080.1	21798944
AT4G25320.1	PGSC0003DMT400071865	AT4G25320.1	23335615
AT4G25320.1	PGSC0003DMT400079651	AT4G25320.1	23335615
AT4G25320.1	PGSC0003DMT400071865	AT5G51590.1	23335615
AT4G25320.1	PGSC0003DMT400079651	AT5G51590.1	23335615
AT4G25320.1	PGSC0003DMT400071865	AT5G51590.1	23335615
AT4G25320.1	PGSC0003DMT400079651	AT5G51590.1	23335615
AT5G51590.1	PGSC0003DMT400071865	AT5G51590.1	23335615
AT5G51590.1	PGSC0003DMT400079651	AT5G51590.1	23335615

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007150.2.1	Tomato	nucleus	88.15	93.85
PGSC0003DMT400071865	Potato	plastid	58.96	66.23
KRG92455	Soybean	nucleus	57.23	60.0
KRH34345	Soybean	nucleus	57.23	60.0
VIT_16s0022g01810.t01	Wine grape	cytosol, nucleus, peroxisome	60.12	59.26
KRH09229	Soybean	nucleus	54.91	55.23
KRH38723	Soybean	nucleus	54.05	54.36
PGSC0003DMT400032575	Potato	plastid	49.13	52.47
PGSC0003DMT400010017	Potato	plastid	46.53	50.47
PGSC0003DMT400045285	Potato	cytosol	20.81	48.65
PGSC0003DMT400033227	Potato	cytosol, nucleus, peroxisome	44.51	46.39
GSMUA_Achr7P06500_001	Banana	cytosol, plasma membrane, plastid	43.64	44.94
GSMUA_Achr1P19840_001	Banana	nucleus	46.53	42.26
Os08t0118000-01	Rice	nucleus	42.77	39.78
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	43.64	39.53
GSMUA_Achr2P03170_001	Banana	cytosol, peroxisome, plasma membrane	43.64	38.72
TraesCS7B01G215600.1	Wheat	plastid	42.49	37.31
CDX94457	Canola	nucleus	40.46	37.04
TraesCS7D01G312100.1	Wheat	plastid	42.2	36.78
HORVU7Hr1G075040.1	Barley	plastid	41.62	36.64
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	41.33	36.57
TraesCS7A01G315100.1	Wheat	plastid	41.91	36.43
Bra019174.1-P	Field mustard	nucleus	41.62	36.36
KXG24283	Sorghum	plastid	41.04	36.13
CDX92693	Canola	nucleus	41.33	36.11
CDY49703	Canola	nucleus	41.62	36.09
Bra013886.1-P	Field mustard	nucleus	39.6	35.96
CDX89422	Canola	nucleus	39.88	35.94
AT4G25320.1	Thale cress	nucleus	41.91	35.89
AT5G51590.1	Thale cress	nucleus	41.91	34.61
CDX87241	Canola	nucleus	38.73	34.27
CDY16785	Canola	nucleus	38.44	33.93
Bra035899.1-P	Field mustard	nucleus	38.44	33.93
CDY38874	Canola	nucleus	41.33	33.81
PGSC0003DMT400075370	Potato	nucleus	34.97	33.8
Bra029164.1-P	Field mustard	nucleus	41.33	33.73
AT5G62260.3	Thale cress	nucleus	39.31	33.66
PGSC0003DMT400014926	Potato	plastid	33.53	33.62
Bra010070.1-P	Field mustard	nucleus	39.02	33.5
CDY00271	Canola	nucleus	39.02	33.5
CDY00488	Canola	nucleus	41.33	33.33
CDX86910	Canola	nucleus	38.44	33.33
CDY32624	Canola	nucleus	40.75	33.25
Bra028265.1-P	Field mustard	nucleus	41.04	33.1
CDX91598	Canola	nucleus	39.88	32.94
PGSC0003DMT400045147	Potato	plastid	31.21	32.73
Bra022555.1-P	Field mustard	nucleus	39.02	32.22
PGSC0003DMT400035486	Potato	nucleus, plastid	24.28	32.18
CDY30710	Canola	nucleus	37.28	32.17
PGSC0003DMT400000467	Potato	nucleus	31.5	32.15
CDX99902	Canola	nucleus	40.75	32.12
CDY65097	Canola	nucleus	38.73	31.98
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	36.99	31.92
PGSC0003DMT400059682	Potato	nucleus	29.19	30.98
PGSC0003DMT400007056	Potato	nucleus	35.55	30.3
PGSC0003DMT400052826	Potato	nucleus	30.35	29.17
PGSC0003DMT400073848	Potato	nucleus	26.88	28.18
PGSC0003DMT400031843	Potato	plastid	31.21	28.12
PGSC0003DMT400075372	Potato	cytosol, nucleus, peroxisome	24.86	26.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400079651	EnsemblPlantsGene:PGSC0003DMG401031022	EntrezGene:102578979	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF18	PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG401031022	SEG:seg
SUPFAM:SSF117856	UniParc:UPI000295AD92	UniProt:M1D280	MapMan:35.1	:	:

Description

AT-hook motif nuclear localized protein 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401031022]

Coordinates

chr3:-:40812194..40817749

Molecular Weight (calculated)

36369.9 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.245

Length

346 amino acids

Sequence
(BLAST)

001: MEEKEGVNSS GVTVKGDEAP ESYRVVPRSE SNNIEFSGSI VATTPVNVTE ETKKKRGRPR KYGPDGKPAV ALSPMPISAS IPLAGDFSAW KNSGSRPVDS
101: FKKKNKFEVE TPGSTGVDLF ALFLFVSALF IEVSYWEEMA YSVGANFTPH VITVNTGEDV NMKIISFAQQ GSRAICVLAA NGAISNVTLR QPNSSGGTLT
201: YEGHFEILSL TGSFMPSDNG VTKSRSGGMS VSLSGPDGQV MGGGLAGMLV AAGPIQIVVG SFLPGQQLEQ KPKKQRVEHA AFAAPPISEE RTDGASSGPS
301: PKVAASISFP GDNLITTNSI YSSRISASQN NISLPGMEPK EQSPSS

Best Arabidopsis Sequence Match ( AT5G62260.3 )
(BLAST)

001: MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL
101: SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV
201: TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP
301: QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ
401: SHSG

Arabidopsis Description

AHL6AT-hook motif nuclear-localized protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVB0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.