Factsheet for Solyc04g053100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094460.2.1
Solyc08g008030.2.1
Solyc08g080960.2.1
Solyc10g085290.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Solyc08g008030.2.1	AT1G63470.1	21798944
AT4G17950.1	Solyc08g080960.2.1	AT1G63470.1	21798944
AT4G17950.1	Solyc10g085290.1.1	AT3G51780.1	21798944
AT4G17950.1	Solyc01g094460.2.1	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g053090.1.1	Tomato	plastid	92.17	90.53
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	33.73	29.63
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	33.73	29.47
Os10t0572900-02	Rice	nucleus	42.17	27.89
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	40.96	22.15
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	43.37	20.45
Solyc01g091370.2.1	Tomato	nucleus	39.16	20.44
KRH58200	Soybean	nucleus	43.98	20.17
OQU82226	Sorghum	plastid	41.57	19.88
CDY41027	Canola	cytosol	31.33	19.55
Solyc08g079630.2.1	Tomato	nucleus	37.35	19.31
Solyc12g094710.1.1	Tomato	nucleus	40.36	18.77
Os04t0589900-01	Rice	nucleus	42.77	18.73
CDY26694	Canola	cytosol, plastid	29.52	18.7
Solyc08g006950.2.1	Tomato	nucleus	43.98	18.67
Solyc08g007530.2.1	Tomato	nucleus	36.75	18.6
GSMUA_Achr2P09840_001	Banana	nucleus	39.76	18.49
Solyc02g082300.2.1	Tomato	nucleus, plastid	28.92	18.39
Solyc03g007150.2.1	Tomato	nucleus	34.94	17.85
Bra025716.1-P	Field mustard	nucleus	28.92	17.84
CDY26693	Canola	plastid	28.92	17.78
Solyc01g094460.2.1	Tomato	nucleus	36.14	17.7
Zm00001d026036_P001	Maize	nucleus	42.17	17.41
CDY01503	Canola	cytosol	27.11	17.37
TraesCS2A01G449500.1	Wheat	plastid	42.17	17.07
Solyc06g035430.2.1	Tomato	nucleus	35.54	17.05
Zm00001d030053_P003	Maize	plastid	42.77	17.03
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	42.17	16.99
Solyc02g038760.2.1	Tomato	nucleus	33.13	16.87
CDY68252	Canola	nucleus	30.12	16.84
KRH28286	Soybean	plastid	34.34	16.81
KXG38867	Sorghum	plastid	42.77	16.78
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	41.57	16.75
CDY01506	Canola	nucleus	30.12	16.61
KRH77206	Soybean	nucleus	33.73	16.57
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	42.77	16.55
Solyc08g080960.2.1	Tomato	nucleus	33.13	16.47
KRH04337	Soybean	nucleus	34.94	16.29
Solyc08g008030.2.1	Tomato	nucleus	33.73	16.18
Bra025717.1-P	Field mustard	nucleus	29.52	16.17
CDY26692	Canola	nucleus	29.52	16.17
CDY41028	Canola	nucleus, plastid	24.1	16.13
Bra025718.1-P	Field mustard	nucleus, plastid	29.52	16.12
AT5G46640.1	Thale cress	nucleus	37.35	16.06
CDY26691	Canola	cytosol, plastid	29.52	15.76
TraesCS1B01G206100.2	Wheat	nucleus	42.77	15.74
CDX78814	Canola	nucleus	38.55	15.72
Solyc08g077030.2.1	Tomato	nucleus	38.55	15.65
CDY03203	Canola	nucleus	33.73	15.64
TraesCS1D01G194900.2	Wheat	nucleus	42.77	15.64
TraesCS1A01G190900.1	Wheat	nucleus	42.77	15.64
Bra017536.1-P	Field mustard	nucleus	33.13	15.58
CDY35172	Canola	nucleus	33.13	15.58
HORVU1Hr1G049980.12	Barley	nucleus	42.77	15.3
CDY44500	Canola	nucleus	38.55	15.24
Bra021027.1-P	Field mustard	nucleus	36.75	14.88
Bra013270.1-P	Field mustard	nucleus	37.95	14.79
CDY08882	Canola	nucleus	38.55	14.71
AT4G17950.1	Thale cress	nucleus	38.55	14.58
CDX76549	Canola	nucleus	38.55	14.55
Solyc11g006190.1.1	Tomato	nucleus	28.92	14.24
Solyc12g019430.1.1	Tomato	cytosol, plastid, vacuole	16.27	14.06
Solyc09g008940.2.1	Tomato	nucleus	33.73	13.43

Protein Annotations

EnsemblPlants:Solyc04g053100.1.1	EnsemblPlantsGene:Solyc04g053100.1	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500	PANTHER:PTHR31500:SF17
PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	UniParc:UPI0002767385	UniProt:K4BSG7
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:51619447..51621987

Molecular Weight (calculated)

17447.2 Da

IEP (calculated)

8.344

GRAVY (calculated)

0.084

Length

166 amino acids

Sequence
(BLAST)

001: MDSQKTSVGA KIIQTSSNHG ELFGVVGKAQ VIHVKTGEII NLSQQGPMKI CVHSATGGIR NVALQESAMG AGIVTYEGLF FIISLSGSVM LSKSSRTCDL
101: SVMLSRSDHI VLGGCVAGKL IAATPVQVVL SSFIPEKEKR ESKGDDDAPK DIRIVDPPPP RSCVGN

Best Arabidopsis Sequence Match ( AT2G33620.1 )
(BLAST)

001: MSGSETGLMA ATRESMQFTM ALHQQQQHSQ AQPQQSQNRP LSFGGDDGTA LYKQPMRSVS PPQQYQPNSA GENSVLNMNL PGGESGGMTG TGSEPVKKRR
101: GRPRKYGPDS GEMSLGLNPG APSFTVSQPS SGGDGGEKKR GRPPGSSSKR LKLQALGSTG IGFTPHVLTV LAGEDVSSKI MALTHNGPRA VCVLSANGAI
201: SNVTLRQSAT SGGTVTYEGR FEILSLSGSF HLLENNGQRS RTGGLSVSLS SPDGNVLGGS VAGLLIAASP VQIVVGSFLP DGEKEPKQHV GQMGLSSPVL
301: PRVAPTQVLM TPSSPQSRGT MSESSCGGGH GSPIHQSTGG PYNNTINMPW K

Arabidopsis Description

AHL10AT-hook motif nuclear-localized protein 10 [Source:UniProtKB/Swiss-Prot;Acc:O22812]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.