CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01703
KXG27470
OQU85994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	KXG27470	AT1G63470.1	21798944
AT4G17950.1	OQU85994	AT1G63470.1	21798944
AT4G17950.1	EES01703	AT3G51780.1	21798944
AT4G17950.1	KXG27470	AT3G61310.1	21798944
AT4G17950.1	OQU85994	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	71.18	80.46
Zm00001d026036_P001	Maize	nucleus	90.49	78.11
Os04t0589900-01	Rice	nucleus	84.73	77.57
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	40.92	75.13
TraesCS2A01G449500.1	Wheat	plastid	81.84	69.27
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	82.13	69.17
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	81.56	68.69
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	34.87	63.68
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	50.72	50.0
GSMUA_Achr2P09840_001	Banana	nucleus	49.86	48.46
PGSC0003DMT400045147	Potato	plastid	43.8	46.06
Solyc04g053090.1.1	Tomato	plastid	22.19	45.56
VIT_02s0012g00900.t01	Wine grape	nucleus	46.11	45.33
KXG38867	Sorghum	plastid	53.03	43.5
KXG25625	Sorghum	nucleus	45.53	42.36
OQU89696	Sorghum	nucleus	46.4	42.26
Solyc04g053100.1.1	Tomato	plastid	19.88	41.57
CDY01503	Canola	cytosol	30.26	40.54
KRH58200	Soybean	nucleus	40.35	38.67
KRH04337	Soybean	nucleus	39.19	38.2
Solyc08g077030.2.1	Tomato	nucleus	43.8	37.16
PGSC0003DMT400052826	Potato	nucleus	38.33	36.94
KRH28286	Soybean	plastid	36.02	36.87
KRH77206	Soybean	nucleus	34.87	35.8
AT5G46640.1	Thale cress	nucleus	39.77	35.75
OQU76344	Sorghum	nucleus	36.31	34.81
EES07975	Sorghum	cytosol	35.16	33.7
OQU85994	Sorghum	nucleus	38.9	33.67
Bra021027.1-P	Field mustard	nucleus	38.9	32.93
EES15662	Sorghum	cytosol, nucleus, peroxisome	33.72	32.87
CDX78814	Canola	nucleus	38.04	32.43
CDY41027	Canola	cytosol	24.78	32.33
CDY03203	Canola	nucleus	33.14	32.12
CDY35172	Canola	nucleus	32.56	32.01
Bra017536.1-P	Field mustard	nucleus	32.56	32.01
CDY41028	Canola	nucleus, plastid	22.77	31.85
CDY44500	Canola	nucleus	38.33	31.67
Bra025716.1-P	Field mustard	nucleus	24.5	31.6
CDY68252	Canola	nucleus	26.8	31.31
CDY26694	Canola	cytosol, plastid	23.63	31.3
CDY26693	Canola	plastid	24.21	31.11
KXG24283	Sorghum	plastid	35.16	31.04
CDY08882	Canola	nucleus	38.9	31.03
Solyc08g006950.2.1	Tomato	nucleus	34.87	30.95
AT4G17950.1	Thale cress	nucleus	38.9	30.75
CDY26692	Canola	nucleus	26.8	30.69
Bra025717.1-P	Field mustard	nucleus	26.8	30.69
CDX76549	Canola	nucleus	38.9	30.68
CDY01506	Canola	nucleus	26.51	30.56
KXG29351	Sorghum	plastid	32.85	30.4
Bra025718.1-P	Field mustard	nucleus, plastid	26.51	30.26
CDY26691	Canola	cytosol, plastid	26.51	29.58
Bra013270.1-P	Field mustard	nucleus	36.31	29.58
KXG27470	Sorghum	nucleus	32.56	27.03

Protein Annotations

EnsemblPlants:OQU82226	EnsemblPlantsGene:SORBI_3006G196900	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF25	PFAM:PF03479	PFscan:PS51742	ProteinID:OQU82226	ProteinID:OQU82226.1	SEG:seg
SUPFAM:SSF117856	UniParc:UPI000B8BAEE9	UniProt:A0A1Z5RFT7	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:-:54942454..54946542

Molecular Weight (calculated)

34782.0 Da

IEP (calculated)

9.441

GRAVY (calculated)

-0.401

Length

347 amino acids

Sequence
(BLAST)

001: MHGMPLAFSN PMAPSPGASS PMNMKPTDMP PGAMYRADSG APPGLQQQQH PGSGGGGAIV AVSGGELVKK KRGRPRKYGP DGSIGLGLKS AAAAGTEAAG
101: GQSGGGGGSS SNPDGKRRGR PPGSGKKKQL DALGSSGTSF TPHIITVKPN EDVASKIMAF SQQGPRTTCI ISANGALCTA TLRQPATSGG IVTYEGHFDI
201: LSLSGSFLLA EDGDTRSRTG GLSVALAGSD GRIVGGCVAG MLMAATPVQV VVGSFIAEGK KPKEEQPKRE PTSVPPHTAG FGAASTASPP SDGTSSEHSD
301: DPGSPMGPNG STFTNAGLPL HSTFAPAGWS LSGNQSRYDP DLKMMTD

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.