Factsheet for Bra040133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21122	Canola	nucleus	97.91	97.15
CDY30005	Canola	nucleus	94.78	95.28
AT3G04590.2	Thale cress	nucleus	80.16	74.7
Bra020612.1-P	Field mustard	nucleus	58.75	63.92
Bra009999.1-P	Field mustard	nucleus	59.27	61.02
KRH68809	Soybean	nucleus	47.52	52.6
VIT_14s0081g00620.t01	Wine grape	nucleus	47.0	50.42
KRG97062	Soybean	nucleus	47.0	49.86
PGSC0003DMT400073848	Potato	nucleus	39.43	45.76
Solyc11g006190.1.1	Tomato	nucleus	39.69	45.1
Bra022946.1-P	Field mustard	nucleus	24.02	35.11
Bra014444.1-P	Field mustard	nucleus	26.37	30.33
Bra025716.1-P	Field mustard	nucleus	21.15	30.11
Bra039309.1-P	Field mustard	nucleus	26.37	29.62
Bra007595.1-P	Field mustard	nucleus	26.11	29.33
Bra025511.1-P	Field mustard	nucleus	21.15	29.24
Bra019359.1-P	Field mustard	nucleus	24.02	27.96
Bra033121.1-P	Field mustard	nucleus	22.19	27.42
Bra037321.1-P	Field mustard	nucleus	22.45	27.22
Bra025717.1-P	Field mustard	nucleus	21.41	27.06
Bra027801.1-P	Field mustard	nucleus	26.37	26.93
Bra027642.1-P	Field mustard	nucleus	26.63	26.77
Bra013646.1-P	Field mustard	nucleus	21.15	26.56
Bra025718.1-P	Field mustard	nucleus, plastid	20.89	26.32
Bra021865.1-P	Field mustard	nucleus	23.76	26.0
Bra003446.1-P	Field mustard	nucleus	22.98	25.96
Bra019174.1-P	Field mustard	nucleus	25.07	24.24
Bra021027.1-P	Field mustard	nucleus	25.59	23.9
Bra029164.1-P	Field mustard	nucleus	26.37	23.82
Bra013886.1-P	Field mustard	nucleus	23.5	23.62
Bra017536.1-P	Field mustard	nucleus	21.67	23.51
Bra035899.1-P	Field mustard	nucleus	24.02	23.47
Bra028265.1-P	Field mustard	nucleus	25.33	22.61
Bra022555.1-P	Field mustard	nucleus	24.54	22.43
Bra010070.1-P	Field mustard	nucleus	22.98	21.84
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	22.45	21.45
Bra013270.1-P	Field mustard	nucleus	23.24	20.89

Protein Annotations

EnsemblPlants:Bra040133.1	EnsemblPlants:Bra040133.1-P	EnsemblPlantsGene:Bra040133	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31500	PANTHER:PTHR31500:SF22	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856
UniParc:UPI0002544EAC	UniProt:M4FGA5	MapMan:35.1	:	:	:

Description

AT3G04590 (E=4e-101) | DNA-binding family protein

Coordinates

chrA01:+:28422944..28424967

Molecular Weight (calculated)

40129.7 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.742

Length

383 amino acids

Sequence
(BLAST)

001: MEPHESHQQQ RLSSPYFHHH LQHHHHHPST VSSANAVPPP NNGLFPPPPP PQANDGSSSH AVFPLSSAVT APSEPLKRKR GRPRKYVTPE QALEAKKMAS
101: AASSSSAKER REQAAGGTTT SSSPGSSKKS HLGSVGKTGQ SFTPHIVNIA PGEDVAQKIV MFAQQSKHEL CVLSASGTIS TASLRQPGGN ISYEGQYEII
201: SLSGSFIRSE QGGKTGGLCV SLSRSDGQII GGAVGTHLTA AGPVQVILGT FQLDRKKDGV KGEASNSGSR LTSPSSTGPG PGPGPLLGMG FRCVMESPGR
301: NPMRGNDEQH HHHQQTGMGG SHHHFMMQAP QGMHMTHPRP SEWGGGGGSS GHDGRGGGGG YDLSGRLGHE SFENGDDEQQ MPD

Best Arabidopsis Sequence Match ( AT3G04590.2 )
(BLAST)

001: MDPNESHHHH QQQQLHHLHQ QQQQQQQQQR LTSPYFHHQL QHHHHLPTTV ATTASTGNAV PSSNNGLFPP QPQPQHQPND GSSSLAVYPH SVPSSAVTAP
101: MEPVKRKRGR PRKYVTPEQA LAAKKLASSA SSSSAKQRRE LAAVTGGTVS TNSGSSKKSQ LGSVGKTGQC FTPHIVNIAP GEDVVQKIMM FANQSKHELC
201: VLSASGTISN ASLRQPAPSG GNLPYEGQYE ILSLSGSYIR TEQGGKSGGL SVSLSASDGQ IIGGAIGSHL TAAGPVQVIL GTFQLDRKKD AAGSGGKGDA
301: SNSGSRLTSP VSSGQLLGMG FPPGMESTGR NPMRGNDEQH DHHHHQAGLG GPHHFMMQAP QGIHMTHSRP SEWRGGGNSG HDGRGGGGYD LSGRIGHESS
401: ENGDYEQQIP D

Arabidopsis Description

AHL14AT-hook motif nuclear-localized protein 14 [Source:UniProtKB/Swiss-Prot;Acc:A1L4X7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.