CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88227
EER89207
EER97871
EES00507
EES04224
EES04804
EES06648
EES11990
EES12747
EES15089
KXG27287
KXG30263
KXG33416
OQU78843
OQU83188
OQU85473

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52240.1	KXG27287	AT1G22920.1	21798944
AT1G52240.1	OQU78843	AT1G34430.1	21798944
AT1G52240.1	EES04224	AT1G34570.1	21798944
AT1G52240.1	EES04804	AT2G42790.1	21798944
AT1G52240.1	EER97871	AT3G06430.1	21798944
AT1G52240.1	EES06648	AT3G16120.1	21798944
AT1G52240.1	KXG33416	AT3G16120.1	21798944
AT1G52240.1	EES12747	AT3G17668.1	21798944
AT1G52240.1	EES00507	AT4G15930.1	21798944
AT1G52240.1	OQU83188	AT4G15930.1	21798944
AT1G52240.1	EER89207	AT4G32960.1	21798944
AT1G52240.1	EES11990	AT5G22310.1	21798944
AT1G52240.1	KXG30263	AT5G22310.1	21798944
AT1G52240.1	EER88227	AT5G57660.1	21798944
AT1G52240.1	OQU85473	AT5G57660.1	21798944
AT1G52240.1	EES15089	AT5G64960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009549_P002	Maize	mitochondrion	88.36	88.04
Zm00001d038989_P002	Maize	nucleus, plastid	78.55	84.71
Os05t0560100-01	Rice	mitochondrion	74.91	72.41
TraesCS1B01G420200.1	Wheat	nucleus, plastid	72.36	70.44
TraesCS1A01G392100.1	Wheat	plastid	71.64	70.23
TraesCS1D01G400200.2	Wheat	plastid	72.0	70.09
OQU84790	Sorghum	cytosol	48.0	60.0
HORVU1Hr1G086590.2	Barley	plastid	70.91	57.86
KXG33101	Sorghum	mitochondrion	52.91	52.06
OQU87589	Sorghum	nucleus	48.18	51.26
Bra021162.1-P	Field mustard	nucleus	40.18	50.92
Bra018956.1-P	Field mustard	nucleus	48.73	50.0
CDY45633	Canola	nucleus	46.91	49.33
AT1G52240.1	Thale cress	nucleus	48.36	48.99
Bra030396.1-P	Field mustard	nucleus	47.45	48.6
CDX87879	Canola	nucleus	46.91	46.32
Bra027189.1-P	Field mustard	nucleus	44.55	46.23
CDX97723	Canola	nucleus	44.36	45.86
AT3G16130.1	Thale cress	nucleus	44.73	45.72
CDY67259	Canola	nucleus	49.09	44.93
CDY52982	Canola	nucleus	49.09	44.93
CDY30136	Canola	nucleus	44.73	44.73
CDY28381	Canola	nucleus	44.55	40.9
CDY20181	Canola	nucleus	44.18	40.03
EER91970	Sorghum	plastid	33.64	37.83
EER99384	Sorghum	nucleus, plastid	31.45	37.37
EES11256	Sorghum	nucleus	31.64	36.94
EES03886	Sorghum	cytosol	36.55	36.88
EER99291	Sorghum	nucleus, plastid	36.55	35.96
EES18335	Sorghum	cytosol	37.45	35.15
KXG30927	Sorghum	cytosol	29.64	30.19
Bra021161.1-P	Field mustard	nucleus	2.73	11.28

Protein Annotations

Gene3D:1.20.58.1310	Gene3D:1.20.58.2010	MapMan:27.4.3.1	EntrezGene:8063587	UniProt:C5YVH8	EnsemblPlants:EES19937
ProteinID:EES19937	ProteinID:EES19937.1	GO:GO:0003674	GO:GO:0005085	GO:GO:0005089	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0065009	InterPro:IPR005512	PFAM:PF03759	InterPro:PRONE_dom
PFscan:PS51334	PANTHER:PTHR33101	PANTHER:PTHR33101:SF3	InterPro:RopGEF	EnsemblPlantsGene:SORBI_3009G229900	UniParc:UPI0001A89262
RefSeq:XP_002441507.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:57042535..57045813

Molecular Weight (calculated)

60922.6 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.513

Length

550 amino acids

Sequence
(BLAST)

001: MARPFQKIGH GLERFSFRRR RSASSSSPLS LASDGTDASS MEAQSQAPAP GQPCTRRALS RSCGSKGSRL SVDLPPPLAG GPSDKGAAGS SSSLAVPPKP
101: VRHEGPPSDA EIVREKFSKL LLGEDMSGTG KGVTSALALS NAITNLAASV FGEQRRLQPM AADQKSRWTK EIDWLLSVSD HIVEFVPSRQ VAENGTCMEI
201: MITQQRQDLQ MNIPALRKLD AMLLEYLDSF EGKQEFWYVK KDSDESGKGN MPRQDDKWWL PTVRVPPNGL SDAYRKWLQN QKELVAQVLK AAMAINANIL
301: MEMEVPESYT ESLPKNGKST LGDSMYKLIT DDYFDPEELL RSVDLSDEHN IVDLKNRVEA SVVIWQKKMT HKDSKLSWGH NVSHEKRGMF EGRAENVLLL
401: IKHRFPGIAQ SSLDISKIQC NKDVGLAILE SYSRTLESLA FTVMSRIEDV LNADLATQDP KNAESMIIAS LTSDDTDKVV SDAKAEVEKM RRMEPVSPML
501: CDYVGPRDQD LRTYGKEGNG PKLTKMSSVA TKRFSYLENL GGTRSPIARH

Best Arabidopsis Sequence Match ( AT3G24620.1 )
(BLAST)

001: MVAALERGLS ASKSFNFKRM FDSSSTKQQQ SQTIVVENGD SHIVESNTPE SQNSDSFVES PVESSLPMIS PLTRPGKRSE RQQADMEMMK DRFAKLLLGE
101: DMSGGGKGVS SALALSNAIT NLAASIFGEQ TKLQPMPQDR QARWKKEIDW LLSVTDHIVE FVPSQQTSKD GVCTEIMVTR QRGDLLMNIP ALRKLDAMLI
201: DTLDNFRGHN EFWYVSRDSE EGQQARNDRT NDKWWLPPVK VPPGGLSEPS RRMLYFQKDS VTQVQKAAMA INAQVLSEME IPESYIDSLP KNGRASLGDS
301: IYKSITEEWF DPEQFLAMLD MSTEHKVLDL KNRIEASVVI WKRKLHTKDT KSSWGSAVSL EKRELFEERA ETILVLLKQK FPGLPQSSLD ISKIQFNKDV
401: GQAVLESYSR ILESLAYTVM SRIEDVLYTD TLALKQTLLA EETSDGGRTT ETDSESAGSS NSGEEAEKHD PHSKTLLDFM GWNDNSSKGG DKPTKSPNLT
501: PKKLSYLEKL ENLNGFRSPK DRH

Arabidopsis Description

ROPGEF8Rho guanine nucleotide exchange factor 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.